RNA id: TU78338


Basic Information

Item Value
RNA id TU78338
length 349
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G58269
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 1356850 ~ 1357249 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCAACACACCAATGGAGATGAATCATATTGTGTCTGTGCTCTACAGTGAGATATATGCCAAcctggagttttttttaatacccTTTACATCATGCAATATCTCTGGTTGTACTGGACCATTGTGAGTGATCTTGCAAATCAATGATGCACCCTCAATATGGTGTACTGATGAGTCATATTCTGTGTATTCAAGTGTAATATGTCTCTGTGAACAGTGTGTCAGCTTGGGTAGGGCGCTGATATGATAATTAAGAGTAGAACTTTGTGAGTACAATTTgtcagttctctctctctctctctctctctcTCAACACACACTGACCGGCTGAACACAGAGGTTAAAAGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78326 lncRNA upstream 22967 1333501 ~ 1333883 (+) True G58260
TU78322 lncRNA upstream 24852 1331546 ~ 1331998 (+) True G58256
TU78321 lncRNA upstream 25512 1331046 ~ 1331338 (+) True G58255
TU78297 lncRNA upstream 243810 1112754 ~ 1113040 (+) True G58237
TU78289 lncRNA upstream 273622 1079609 ~ 1083228 (+) True G58230
TU78361 lncRNA downstream 119425 1476674 ~ 1562520 (+) True G58286
TU78366 lncRNA downstream 119425 1476674 ~ 1562520 (+) False G58286
TU78455 lncRNA downstream 344658 1701907 ~ 1728333 (+) True G58347
TU78489 lncRNA downstream 575758 1933007 ~ 1951272 (+) True G58372
TU78506 lncRNA downstream 704825 2062074 ~ 2062569 (+) True G58383
XM_039804456.1 mRNA upstream 27227 1157470 ~ 1329623 (+) True si:dkeyp-14d3.1
XM_039804458.1 mRNA upstream 27227 1252293 ~ 1329623 (+) False si:dkeyp-14d3.1
XM_039802986.1 mRNA upstream 229766 1105964 ~ 1127084 (+) True LOC120560446
XM_039803459.1 mRNA upstream 304567 1029257 ~ 1052283 (+) False adamts13
XM_039804544.1 mRNA downstream 14535 1371784 ~ 1396195 (+) True glt1d1
XM_039804545.1 mRNA downstream 14535 1371784 ~ 1395796 (+) False glt1d1
XM_039804486.1 mRNA downstream 119839 1477088 ~ 1480626 (+) True fzd10
XM_039803421.1 mRNA downstream 144341 1501590 ~ 1531972 (+) True piwil1
XM_039803422.1 mRNA downstream 144341 1501590 ~ 1531972 (+) False piwil1
TU78000 other upstream 1144480 210742 ~ 212370 (+) True LOC120560799
TU78941 other downstream 1521152 2878401 ~ 2879744 (+) False lman2lb
TU79382 other downstream 2760030 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 3066892 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 3074922 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 3075419 4432668 ~ 4432739 (+) True trnaq-uug_2

Expression Profile