RNA id: TU78455



Basic Information


Item Value
RNA id TU78455
length 274
lncRNA type read_through
GC content 0.43
exon number 2
gene id G58347
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 1701907 ~ 1728333 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


gaacacaggcacgcacacaggtttgtggcactatctttgtggggacacatcattgacataatgcattccctagccccttaccctaaccttaaccatcacaactaaatgcctaaccttaacccttacccttaccttaaccatcacaactaaatgcctaaccttaacccttaccctcaccctaaccataacctaattctatccctaatcctaaaaccaagtcttaacccttaccctcaccctaaccataacctaattctatccctaatcctaaaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU78361 lncRNA upstream 139387 1476674 ~ 1562520 (+) True G58286
TU78366 lncRNA upstream 139387 1476674 ~ 1562520 (+) False G58286
TU78338 lncRNA upstream 344658 1356850 ~ 1357249 (+) True G58269
TU78326 lncRNA upstream 368024 1333501 ~ 1333883 (+) True G58260
TU78322 lncRNA upstream 369909 1331546 ~ 1331998 (+) True G58256
TU78489 lncRNA downstream 204674 1933007 ~ 1951272 (+) True G58372
TU78506 lncRNA downstream 333741 2062074 ~ 2062569 (+) True G58383
TU78505 lncRNA downstream 333768 2062101 ~ 2062569 (+) False G58383
TU78509 lncRNA downstream 334287 2062620 ~ 2062956 (+) True G58384
TU78508 lncRNA downstream 334358 2062691 ~ 2062956 (+) False G58384
XM_039803423.1 mRNA upstream 34375 1664984 ~ 1667532 (+) True LOC120560673
XM_039803424.1 mRNA upstream 34375 1664984 ~ 1667532 (+) False LOC120560673
XM_039803421.1 mRNA upstream 169935 1501590 ~ 1531972 (+) True piwil1
XM_039803422.1 mRNA upstream 169935 1501590 ~ 1531972 (+) False piwil1
XM_039804486.1 mRNA upstream 221281 1477088 ~ 1480626 (+) True fzd10
XM_039803064.1 mRNA downstream 8345 1736678 ~ 1771673 (+) True ep400
XM_039803066.1 mRNA downstream 8345 1736678 ~ 1771673 (+) False ep400
XM_039803065.1 mRNA downstream 8345 1736678 ~ 1771673 (+) False ep400
XM_039803069.1 mRNA downstream 8345 1736678 ~ 1771673 (+) False ep400
XM_039803067.1 mRNA downstream 8345 1736678 ~ 1771673 (+) False ep400
TU78000 other upstream 1489537 210742 ~ 212370 (+) True LOC120560799
TU78941 other downstream 1150068 2878401 ~ 2879744 (+) False lman2lb
TU79382 other downstream 2388946 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 2695808 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 2703838 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 2704335 4432668 ~ 4432739 (+) True trnaq-uug_2

Expression Profile