RNA id: TU78768


Basic Information

Item Value
RNA id TU78768
length 361
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G58599
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 2524207 ~ 2524567 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCGTCATATTAACTCTTCCACTGCAAATGAGTTCGCTGAATGCTATTTGGGAAATGTTATCACTGCCCATGATCACCTCTTGAGCCCTGATTAGCTAATATCCTCCTTCAACACATCTTGCTCAGCTATCCTTGATACTGTGGCCCCTCTAAAACTTAAACGCCCTAATTTTAAATCCCAACAGTGGCTTGATGATTCCACCCGCCATCTCAGGCAGATTTGTCGAAGAGCGGAGCGTAAGTGGAAAAAAGATCACCTCCTAGTCTCTTTAGAAATATTCAGAAATTCCCTGGCCAATTTCCAAGCTGCAGCAAAAAAAGCCAGGGCTAAGCATTTCTCAGACATTATAACTAAACATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78767 lncRNA upstream 273 2523641 ~ 2523934 (+) True G58598
TU78766 lncRNA upstream 569 2523439 ~ 2523638 (+) True G58597
TU78740 lncRNA upstream 86735 2436384 ~ 2437472 (+) True G58574
TU78714 lncRNA upstream 211542 2309350 ~ 2312665 (+) False dock5
TU78625 lncRNA upstream 391933 2131948 ~ 2132274 (+) True G58478
TU78770 lncRNA downstream 1485 2526052 ~ 2526270 (+) True G58601
TU78772 lncRNA downstream 5925 2530492 ~ 2530723 (+) True G58603
TU78788 lncRNA downstream 99550 2624117 ~ 2625352 (+) True G58618
TU78832 lncRNA downstream 138836 2663403 ~ 2665691 (+) True G58650
TU78833 lncRNA downstream 141251 2665818 ~ 2667041 (+) True G58651
XM_039804521.1 mRNA upstream 89265 2365750 ~ 2434942 (+) True LOC120561412
XM_039804522.1 mRNA upstream 90160 2365750 ~ 2434047 (+) False LOC120561412
XM_039804523.1 mRNA upstream 106038 2365750 ~ 2418169 (+) False LOC120561412
XM_039803547.1 mRNA upstream 214033 2273678 ~ 2310174 (+) True dock5
XM_039802356.1 mRNA upstream 257464 2262909 ~ 2266743 (+) True LOC120560154
XM_039802996.1 mRNA downstream 13387 2537954 ~ 2539133 (+) True LOC120560453
XM_039803790.1 mRNA downstream 36182 2560749 ~ 2577050 (+) True anapc5
XM_039804278.1 mRNA downstream 76323 2600890 ~ 2616973 (+) True lrrc75ba
XM_039804270.1 mRNA downstream 105937 2630504 ~ 2634683 (+) True asphd2
XM_039804271.1 mRNA downstream 105937 2630504 ~ 2634683 (+) False asphd2
TU78000 other upstream 2311837 210742 ~ 212370 (+) True LOC120560799
TU78941 other downstream 353834 2878401 ~ 2879744 (+) False lman2lb
TU79382 other downstream 1592712 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 1899574 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 1907604 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 1908101 4432668 ~ 4432739 (+) True trnaq-uug_2

Expression Profile