RNA id: TU78833


Basic Information

Item Value
RNA id TU78833
length 1224
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G58651
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 2665818 ~ 2667041 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACACTTTTCTGGGCTCGATTTTCATTCCACACGACCAGCTGTTTCCGGAGTAAGGGACGACTGGCCGTAGAATTATTATATCTGTAGTCTGTCGACCTCAAACCTTTCTAGGAGCAAAGCTAGTCAAAAACAAACGTAAAGGTTAGTAAGAGAAGTGTACACGTGTATATGTCCAGCACTTGTTTCAAGCAGTCTACTTAGCTCCTCGCCAGCCTTTTTTCGGAGCGGTTATCGTCGATACATCTCAGAATTGAAGGAACTAGAGTGGAATGAAGATCTGCTctcttgtgtcttttttttttttttttttccacatgagAACCAAAGAATTGCCGCCATTCCATCAAAATTCCAGTGTCCTAATGTGACACTGAAGGTTCTTCATTTCTTTCATCCTtctttttttgcttcttttcCTCACCTGGTAAAACAGTGAACAAACCAGGGGAGGAAAACATCTCATGTCATcagatttaatatttaattattcCCCTGCCACGGCGCCCAATCTTCTTGAAATGTCCCTccttatgaaaataaaataaagtaattttaaatgcattgtaatttaatgtaaaatTTGTTTGAGATAACCTTTCCCAGCTTGTTgctatttctctttctctcccccctcaTTTTTCAAAAGCAACTGAAAATTTGAGATGAATTTAAACTGAGACAAATTTTAAACAGCAAAACTTCTGCCAATGTGTCCTCATCATCCAGGCagcgaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacggtctgaCAGCCACCGATCACACAGTGCGAGTGTGTGAGACAGTGAGTGTGCGCTTAAATGTGATTCCTACTGTGTAGACATACATGTGCTGGATGAATAAATGCTCTTCTGGGGGCTGTAGGCAGCAGCAGGTGGACTGGTGAAATGTTCTCTAGACCCCTGATCTTACTCTGATGTGGCATATATCTGCAAAATGGGAAATGCTGATAAATGCTGtctctttttaataaatgtgCTATTTTGTCAGAATGTGGTGCTGCTGTTTTTCCCCATCCCGACACCCCTGATGTTGCCGTCGAGTACTTTTGTGAGGTATCTTGGTACTTGACATTAGTCTAAATTTGAATTGTTTTGTTGCATGTGAATCCGCAGAATTTTAAAGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78832 lncRNA upstream 127 2663403 ~ 2665691 (+) True G58650
TU78788 lncRNA upstream 40466 2624117 ~ 2625352 (+) True G58618
TU78772 lncRNA upstream 135095 2530492 ~ 2530723 (+) True G58603
TU78770 lncRNA upstream 139548 2526052 ~ 2526270 (+) True G58601
TU78768 lncRNA upstream 141251 2524207 ~ 2524567 (+) True G58599
TU78834 lncRNA downstream 217 2667258 ~ 2667835 (+) True G58652
TU78837 lncRNA downstream 1045 2668086 ~ 2668677 (+) True G58653
TU78858 lncRNA downstream 38772 2705813 ~ 2706139 (+) True G58673
TU78864 lncRNA downstream 49687 2716728 ~ 2716938 (+) True G58679
XR_005639556.1 lncRNA downstream 66499 2733540 ~ 2735823 (+) True LOC120561019
XM_039803601.1 mRNA upstream 3368 2656511 ~ 2662450 (+) True mlec
XM_039803596.1 mRNA upstream 11221 2647129 ~ 2654597 (+) False cabp1a
XM_039804452.1 mRNA downstream 211333 2878374 ~ 2883861 (+) True lman2lb
XM_039804446.1 mRNA downstream 217720 2884761 ~ 2889848 (+) True LOC120561358
XM_039804447.1 mRNA downstream 218306 2885347 ~ 2889848 (+) False LOC120561358
XM_039804435.1 mRNA downstream 230499 2897540 ~ 2913826 (+) True LOC120561351
XM_039804432.1 mRNA downstream 270988 2938029 ~ 2993038 (+) False nsmfb
TU78000 other upstream 2453448 210742 ~ 212370 (+) True LOC120560799
TU78941 other downstream 211360 2878401 ~ 2879744 (+) False lman2lb
TU79382 other downstream 1450238 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 1757100 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 1765130 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 1765627 4432668 ~ 4432739 (+) True trnaq-uug_2

Expression Profile