RNA id: XM_039802183.1


Basic Information

Item Value
RNA id XM_039802183.1
length 2030
RNA type mRNA
GC content 0.45
exon number 7
gene id si:ch211-107p11.3
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 2685891 ~ 2689087 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCACAGTTTACTCCTAATaagcctttttcacagcagacatgttgacttgtcacagTGTCCTTGTGTTATTCCACATAATCACTCTACACGAAATTTCCCATGTGGCAGAATGGTTAttatcattttaaatttgtattattatctaGTAAGATGATCTAGACGTGTTTCACGTGACTCGCTCTTTGTTACAGACTCCACCTCTTTCATGTGAACGCGCCTTAAGCCTAATAAGAAAATCCTGGGTTAACAAAGCTTGCTGATATCCAGCTTCATAACACCGGTTATCTTTCTCCCGTTTCCGTCGCGTACACAGTTATTGCTCCATGTGAAGCGTGCTGTGATTAACCGTCGCGTCTATTAAGCTCGGATTTGTTCCGTTTTGCGACCTTTGGGTTACGATTTGATTACTAAATCTAGCATTGAAACATCTCGGATAACTGCGCGCACCCGCTCCACCATAAAGGGAAGAGCAATCGCACGCCGAAAGCCTGATCCCAATCCATGAACACCGACAGAGatttCCAGATGATGAAAAAACAAGAGAGGGCACATTTTTTCAGCTCTAAAGAGCAGGATCTCATTTTGAAGTTGTacgaagaagagagagaggtattGACAGCCAAATCCAACACTACCAGTGCCTCTAAACTGAGAGAGGAAGCCTGGCAGAGAATTGCTGATAAAATAAACGCGGTATCGGACAGCGGCTACAAAAGATCATGGCAGCAAGTGAAAgtcaaacataaaaatatagtGCAAACAGCGAAAAGAAGACAGGTGGGGGCGACGAGGACTGAGGGGGAGTCAGCAACCCCGTCGCTGACGTCCGCAGAGGAAGATGTGCTGCAGGACAAAGACAGCCTGCTGAGAGTGGAGGTCCTCCCTGGGGGGGCCTGCATTGAGCCACTCACTGGATCTGACAACTCTTTTATTAGTGTCTCAGGCCATCCTGTCCTCCTCCTGCCTGTCACAAAGACTGAACCAGAGAGCCTGAGCAGTGATGAGACAGACGTCAGTGACTCTCATTTTGAAGGGGATGTGCACAGCAGCAGCATCCAGGAGAGGGCCAACTCAGCGTTTGCTGCGACCGGTGGAAGAAGTGCAGAGAGGCAGACGGAAGACATACGAGCCCTTTACTGCTGCTACCTCAAGAAGGAGATCGAGAACCGTGACCAACAGATGGCATACAGAGCACTTAAAATGAGGAAGATGGAGAAAGAAATTTTATTACTTGATAAGCAGCTCATGTGACCATGTAAAGAAATgctaatgttttttgttttttatcttactattataatatgttaaaacaatatttgatttatttaaggCCAGGCAATTGTAATAAATTGCTTCAGTCACATCATTTGTCATCTTACCTTATATGTAACCAGGTTGGGGAGTTAAGTGCAATGATGGGCAGCAGTGTCACTTGCAATTCTGCCATTAATATGTGTCAGACCATTTCTTTTTTATGGACATTTCCATCTTTAATGATAGGACAgctcagacatgaaaggggagagagagggggaagacatgcaggaaaccatCATGGGTCGGCCTCGAACcatggaccttctgcgtcgaggaattgACCTCAATATacgtgtgcctgctctaccaactgagctaaccggccacgtGTCAGACCATTTCTTATTGTTGCAGTGCACTGTGCAACTCTACACATGCAACAGTACACATCTAGTGCAGTCCGCAGTATCGGAGTAATTTCCTTCAGTTGCCCAAAGATCATTTCAGTCCCTTTATTGTCACGGCAGGAGTTGCCCCAAGTTGGGCTAGTGAGGTTTCAGAGTAGGATGGTCAGGAAGTGGAGCCGCTGTGTAAACCCTGTGGCCCAGGAGGATGCCATTATCACATGATTACAGTGCATTGACACACTGACTGTACTCCTGCACATTGGATCAAACAATGAATGACTTTAAATTGAGGGGCACTTACATCCACGAGTAGTGTAGGAACTGGTAACATAAAAGAAAgtcatatataaatattttgtatttctA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78800 lncRNA downstream 129028 2556645 ~ 2556863 (-) True G58625
TU78777 lncRNA downstream 134852 2550840 ~ 2551039 (-) False LOC120560995
TU78765 lncRNA downstream 167690 2517955 ~ 2518201 (-) True G58596
XR_005639571.1 lncRNA downstream 194097 2491267 ~ 2491794 (-) True LOC120561196
TU78755 lncRNA downstream 206283 2476272 ~ 2479608 (-) True G58588
TU78863 lncRNA upstream 26814 2715901 ~ 2716316 (-) True G58678
TU78904 lncRNA upstream 112655 2801742 ~ 2801971 (-) True G58716
TU78913 lncRNA upstream 124284 2813371 ~ 2813695 (-) True G58725
TU78936 lncRNA upstream 145101 2834188 ~ 2837683 (-) False LOC120561349
TU78940 lncRNA upstream 184268 2873355 ~ 2873629 (-) True G58748
XM_039804088.1 mRNA downstream 2188 2670234 ~ 2683703 (-) True hps4
XM_039804090.1 mRNA downstream 14796 2667262 ~ 2671095 (-) False si:ch211-170d8.2
XM_039804089.1 mRNA downstream 15793 2667262 ~ 2670098 (-) True si:ch211-170d8.2
XM_039802027.1 mRNA downstream 58130 2619215 ~ 2627761 (-) True ggt5a
XM_039803791.1 mRNA downstream 93145 2578954 ~ 2592746 (-) True ggt1a
XM_039804494.1 mRNA upstream 1540 2690627 ~ 2692543 (-) True LOC120561394
XM_039804433.1 mRNA upstream 145101 2834188 ~ 2846607 (-) True LOC120561349
XM_039804445.1 mRNA upstream 164221 2853308 ~ 2855703 (-) True LOC120561357
XM_039804440.1 mRNA upstream 326522 3015609 ~ 3042256 (-) False zgc:162952
XM_039804439.1 mRNA upstream 326522 3015609 ~ 3042256 (-) True zgc:162952
XR_005639531.1 other downstream 93145 2577875 ~ 2592746 (-) False ggt1a
XR_005639512.1 other downstream 546263 2137796 ~ 2139628 (-) False ankrd39
XR_005639501.1 other downstream 1027844 1532053 ~ 1658047 (-) True rimbp2
TU78857 other upstream 1523 2690610 ~ 2692522 (-) False LOC120561394
TU79176 other upstream 708082 3397169 ~ 3397496 (-) True G58919
TU79177 other upstream 726540 3415627 ~ 3416854 (-) True G58920
TU79274 other upstream 999542 3688629 ~ 3689338 (-) True G58994
TU79517 other upstream 1735103 4424190 ~ 4430041 (-) False sub1b

Expression Profile