RNA id: XM_039804452.1


Basic Information

Item Value
RNA id XM_039804452.1
length 1728
RNA type mRNA
GC content 0.50
exon number 9
gene id lman2lb
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 2878374 ~ 2883861 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCACGCCTCACGTCACATGTTGTGTAAAGATGGCTGACACTGTCACCAAGTCAGATCCGCTGGGAAGTTTCTGGCTTTTATGTCcaatgtttcattttaaaaacctCCGGAAAttaacatgtttgtttgttagcGTTTGTATTTTAATAAGTCCGTCGCTGGCAGACGAACAGGACTTTATGGAAGACTTTATGAAGCGGGAATATTCTCTGGCAAAGCCGTACCATGGCTTGGGGTTCTCCAGCTCCTCCCAGTGGGATCTGATGGGCACTGCCATGGTTACCCCGGAGCACGTGAGGCTGACCCCTGACAtgcagagcagacagggagcCGTTTGGAGTCGAGTTCCTTTGTTGGTGCGGGATTGGGAGCTTAGGGTGCACTTTAAAATCCACGGCGTGGGAAAGAAGAACTTCAATGGGGATGGCATGGCTATCTGGCTAACCAAAGACCGCATGCAGAATGGTAGGAAGGCACTGGATCACTCTACAGGGGGCATGTCCCtaggtATCCACTGTGACTGTCACTTTGTCACACCCAATGCTGACAAGAGCCATGATAGGGCTTTCCCATACGTCTCAGTGATGCTGGGGAACGGGACTCTGTCATATGACCACGATTCTGATGGACGGCCCACTGAGCTCGGAGGATGTACAGCTATGGCGCGCAACGCAGTCCACGACACCTTTCTCCTCGTCAGATACTCCAAACAGCGCCTGACGCTGCTGGTAGACGTTGACGGTAAGCAGGAATGGAAAGACTGTGCTGACATCACAGGCCTGTGGCTGCCTGCCGGCTACTTCCTGGGTGCGTCCTCGGCCACCGGAGACCTGTCAGATAACCATGACATCATCTCCATCAAGCTGTACCAGCTGACAGTAGAGAGGACGCCTGAGGACggggaccaggaccaggacgAGGTCACTGTCCCCAGAGTGGACAACATGGAGCAGTTCCATGTGGAGGTCCAGGAGGAAGGGATGAGCGGAGTGCAGTTCTTCTTCACCCTGGTCTTCTCCATCCTGGGCCTGGCTGTGCTGGCCGTGGTAGGCCTGGTCCTTTACGGCCGCTGGAAGGAAAACAGACGCAAACGCTTCTATTGATCAGAAAAACCTTCAGAATGTATGTTTCCTAATCAACGTATACCACTCAGTGCAAAGACTGCCACAGCTTACTGAAGCATACAGAGAAGTGACCAACCGGATGGGTCTGGAGCCCAGAGCCAAGAGAACACAAAGAGCCAGCGGCCACATATTCTTTTTTGTCTGCGTTATGGAAGATTAATGAGATAAAGCTGCTTTAGTGGAAAGCCTTCTGTTGAAACTGGATCATGTGAATGGCACTGCAACACGTGCACTAACTGAGACACTGTAGATTTAACATATGAGTTTCACCAGCAGGAAGACAAACCTCAAAATCCCAGATGCTGTGTGTAGTTTACTGACATCATGTTTAAATTTTAATTACCTCTGACTGCCACTTGGTGCTGCCACAGTGCAGCCTTAATTTGCTGTGGCGACCGATCAAGCTGTGGATCATCAGAGACTTGTTCTTGCTGCACTGAAAAGTCCAAATGTTTGAGCTGCCATGTATTTGAGATAAAATAAGCCCGAAAAAAGAAGATGTAAATGTATGATTAATGAAAACATCATGCTCTATGCTGTACGTCAAAGAAAGAATGGGTGTCGAGCTAGGACCAATAAAGACGGGCCCTGACTCCATGTTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78937 lncRNA upstream 29524 2848391 ~ 2848850 (+) True G58745
XR_005639590.1 lncRNA upstream 48843 2821879 ~ 2829531 (+) True LOC120561364
TU78914 lncRNA upstream 63843 2813924 ~ 2814531 (+) True G58726
TU78911 lncRNA upstream 67097 2810866 ~ 2811277 (+) True G58723
XR_005639589.1 lncRNA upstream 73718 2803541 ~ 2804656 (+) True LOC120561363
TU78965 lncRNA downstream 8515 2892376 ~ 2892715 (+) True G58761
TU78991 lncRNA downstream 158278 3042139 ~ 3042443 (+) True G58778
TU78994 lncRNA downstream 164894 3048755 ~ 3049029 (+) True G58780
TU79007 lncRNA downstream 189802 3073663 ~ 3074232 (+) True G58793
TU79047 lncRNA downstream 272201 3156062 ~ 3156295 (+) True G58817
XM_039803601.1 mRNA upstream 215924 2656511 ~ 2662450 (+) True mlec
XM_039803600.1 mRNA upstream 223777 2644125 ~ 2654597 (+) False cabp1a
XM_039804446.1 mRNA downstream 900 2884761 ~ 2889848 (+) True LOC120561358
XM_039804447.1 mRNA downstream 1486 2885347 ~ 2889848 (+) False LOC120561358
XM_039804435.1 mRNA downstream 13679 2897540 ~ 2913826 (+) True LOC120561351
XM_039804432.1 mRNA downstream 54168 2938029 ~ 2993038 (+) False nsmfb
XM_039804429.1 mRNA downstream 54168 2938029 ~ 2993038 (+) True nsmfb
TU78000 other upstream 2666004 210742 ~ 212370 (+) True LOC120560799
TU79382 other downstream 1233418 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 1540280 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 1548310 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 1548807 4432668 ~ 4432739 (+) True trnaq-uug_2
TU79509 other downstream 1646249 4530110 ~ 4531165 (+) False mrpl41

Expression Profile