RNA id: TU79007


Basic Information

Item Value
RNA id TU79007
length 454
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G58793
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3073663 ~ 3074232 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgttgagctctctgttttagctacagagtgagacatctcacttctgttccatctttgttgggagtcgcacatgctcagtacctaggtaaggactactagccagtcagaagcagagtatgagggcgtgccctgacagtacctaggtaaggactactagccagtcagaagcagagtatgagggcgtgccctgacagtacctaggtaaggactactagccagtcagaagcagagtatgagggcgtgcactgacagtacctaggtaaggactactagccagtcagaagcagagtatgagggcgtgccctgacagtacctaggtaaggactactagccagtcagaagcagagtatgagggcgtgccatgacAGTACCtcggtaaggactactagccagtcagaagcagagtatgagggcgtgcactgacagtacctaggtaaggactactagccagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78994 lncRNA upstream 24634 3048755 ~ 3049029 (+) True G58780
TU78991 lncRNA upstream 31220 3042139 ~ 3042443 (+) True G58778
TU78965 lncRNA upstream 180948 2892376 ~ 2892715 (+) True G58761
TU78937 lncRNA upstream 224813 2848391 ~ 2848850 (+) True G58745
XR_005639590.1 lncRNA upstream 244132 2821879 ~ 2829531 (+) True LOC120561364
TU79047 lncRNA downstream 81830 3156062 ~ 3156295 (+) True G58817
TU79049 lncRNA downstream 91381 3165613 ~ 3165841 (+) True G58819
TU79148 lncRNA downstream 322921 3397153 ~ 3397790 (+) True G58892
TU79149 lncRNA downstream 340872 3415104 ~ 3415416 (+) True G58893
TU79154 lncRNA downstream 415559 3489791 ~ 3490092 (+) True G58898
XM_039804432.1 mRNA upstream 80625 2938029 ~ 2993038 (+) False nsmfb
XM_039804429.1 mRNA upstream 80625 2938029 ~ 2993038 (+) True nsmfb
XM_039804430.1 mRNA upstream 80625 2938029 ~ 2993038 (+) False nsmfb
XM_039804431.1 mRNA upstream 80625 2938029 ~ 2993038 (+) False nsmfb
XM_039804435.1 mRNA upstream 159837 2897540 ~ 2913826 (+) True LOC120561351
XM_039804418.1 mRNA downstream 140357 3214589 ~ 3234118 (+) True rabl6b
XM_039804420.1 mRNA downstream 140357 3214589 ~ 3234118 (+) False rabl6b
XM_039804419.1 mRNA downstream 140358 3214590 ~ 3234118 (+) False rabl6b
XM_039804421.1 mRNA downstream 140358 3214590 ~ 3234118 (+) False rabl6b
XM_039804444.1 mRNA downstream 165897 3240129 ~ 3245982 (+) True imp4
TU78941 other upstream 193919 2878401 ~ 2879744 (+) False lman2lb
TU78000 other upstream 2861293 210742 ~ 212370 (+) True LOC120560799
TU79382 other downstream 1043047 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 1349909 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 1357939 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 1358436 4432668 ~ 4432739 (+) True trnaq-uug_2
TU79509 other downstream 1455878 4530110 ~ 4531165 (+) False mrpl41

Expression Profile