RNA id: TU79022


Basic Information

Item Value
RNA id TU79022
length 1992
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G58807
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3011390 ~ 3013381 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atagatggatagatggatagatggatagatagatagatagatagatagatagattcatCTAATCTAGCTTGTATACACTGGTCCAACTGCCTTAGTTTATACCAACTCTATCTCTTTTCACCAAACAAAGAGATCCACTAAGTCCATTACTTTTCATTTTAGCTATTGAGCCACTCTCCATAGCTCTTATGCAACAACAGTATACAAGGTATCTCACGTGTAGCCGAACCCATACTGTTTTGTGTTATGTggataatttattattatatggTACCAGCCccctcataagtgtacctgaaGTCCTTAGAGTTCTGGAAGAACTTGGGATAATATCAGGGTATAAACTTAATTTCAATAAAAGTGATTACTTCAACATTAGTAGGAATGCTGAATATTATCACAATCTACCATTTCAACTCTCTGCTAACTCCTTCACGTACTTGGGGGTAAAGATGACTAAATCCtattacagtttatttaaagGTAATTTCGCTCCTCTTCTGGAACAGTGCAAAATAGATATGAAATGATGGTCTGCTTTACAGTCATCTCTTATTGGAAGAACAAACTGTAAAGATAAATGTTTTTCCCAAATTATATTTGTTCCAAGAGATACCTACTTTTATACtgcaatcattaaaaaaaaagcatccaaTCAGATCATAACTACCTTTATTTGGAATGGTAAATCAGCTCATATAAGGAGAGAATTTctggaaagacaaaaaaactagGGAGGCTGTCCCTTCCAAACCTGCACTCACATTACTGGGCTGCAAATTGAAATGCTAGCTCCCTGTGGCTAAAGGATTGGGATGGTACAACCCCTGCGTGGCTTCAGAATAAAACGGCCATCAGCAGGCCACACTCGCTCCCTGCTTTACTTTGCACATCTTTGACTTCACTAATAAATGATATTAATGGAAATAAAATTGTAACCCAATCACTATGCAAGTTACAGTTAAAAAACCATTGGGTATTCAAAACATTTCTATATACTCACCCATAATAAATAATCACATATTTCAGCCGTCTTTATTAGACAAAGGCTTCCAAATTTAGTATGACAGGGGTATACACACCATCTGGGACTTAATTGATAGCACTTTTGCCAACTTTGAACAAATATCCATATATCTAATTGACTACTTACAAATTAGGGACTTTGAGTTTGCTAATTATCAACTAACCCCACTCTATCATGTCTGGATTCTTTGTTAAGGGTCAATACGTTACTTAAAGGTAGAGAGTCAATGAATTATACTCAGAAATAATCTAGGGGGCCCACTCTCAGATGAGGAATGGGACATGGCTCTGTCTAGCATTCATTCCTCTTCTATATGCTCAAGACATGCCTTAATACAGTTCAAGGTGGTGCATTGGCTACACTTTTCTAAAGCTAAACTTGCCAGAATATTCCCGCACCTAAACCCTATATGTGCCGGGGGCAGACAAAGCCCAGCAACCATCTACCATTGTGGTCTTGCCCAAAACCTTACCCGTTCTGGTGATCCTTTTTTGACACTATCTCCAAGTCTTATGGCCGTAATATTATGCCTTCTCCTACAATTGCTATTTTTGGTATATTCTCAGAGGATTACAATCTTCCTGCTCATTTAAAAAAGGTCATTGCCTTTTCCTCTCTTTTAGCTGGACGCTCTATTCTATTCAATTGGAGGGATGTATTTCCTCCATCACATAACCAATGGATTAAAGATTTAATGATGAACATCAAGCTAGAAACAATCAGATGCACCCTCAATAGTTGTACTAGGAGATTTTACAAAACCTGGGACCCATTAATAAACTATGTGAATAATTTACCCGGCCTGGAACTATAAACCCATGCATTTATTGGTGATCTGTCTTTCTTGCTTAAACGGACCAGGATGCTcgtggttgttgtgtttttctttgcttaGTTTGTTTTTCGGCTTTAAATGTTGCTgtcttttgttttagtttttttggttATGTTCTCGACCTAGTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79020 lncRNA downstream 11975 2999199 ~ 2999415 (-) True G58806
TU78940 lncRNA downstream 137761 2873355 ~ 2873629 (-) True G58748
TU78936 lncRNA downstream 173707 2834188 ~ 2837683 (-) False LOC120561349
TU78913 lncRNA downstream 197695 2813371 ~ 2813695 (-) True G58725
TU78904 lncRNA downstream 209419 2801742 ~ 2801971 (-) True G58716
TU79039 lncRNA upstream 36288 3049669 ~ 3053451 (-) False tnc
TU79048 lncRNA upstream 148504 3161885 ~ 3162127 (-) True G58818
TU79088 lncRNA upstream 219225 3232606 ~ 3233661 (-) False si:ch211-102c2.4
TU79087 lncRNA upstream 220144 3233525 ~ 3240063 (-) False si:ch211-102c2.4
TU79091 lncRNA upstream 220144 3233525 ~ 3240063 (-) True si:ch211-102c2.4
XM_039804445.1 mRNA downstream 155687 2853308 ~ 2855703 (-) True LOC120561357
XM_039804433.1 mRNA downstream 164783 2834188 ~ 2846607 (-) True LOC120561349
XM_039804494.1 mRNA downstream 318847 2690627 ~ 2692543 (-) True LOC120561394
XM_039802183.1 mRNA downstream 322303 2685891 ~ 2689087 (-) True si:ch211-107p11.3
XM_039804088.1 mRNA downstream 327687 2670234 ~ 2683703 (-) True hps4
XM_039804440.1 mRNA upstream 2228 3015609 ~ 3042256 (-) False zgc:162952
XM_039804439.1 mRNA upstream 2228 3015609 ~ 3042256 (-) True zgc:162952
XM_039804443.1 mRNA upstream 32295 3045676 ~ 3047802 (-) False b3galt8
XM_039804442.1 mRNA upstream 32295 3045676 ~ 3047753 (-) True b3galt8
XM_039804414.1 mRNA upstream 37469 3050850 ~ 3134549 (-) True tnc
TU78857 other downstream 318868 2690610 ~ 2692522 (-) False LOC120561394
TU78855 other downstream 322541 2686676 ~ 2688849 (-) False si:ch211-107p11.3
XR_005639531.1 other downstream 418644 2577875 ~ 2592746 (-) False ggt1a
XR_005639512.1 other downstream 871762 2137796 ~ 2139628 (-) False ankrd39
XR_005639501.1 other downstream 1353343 1532053 ~ 1658047 (-) True rimbp2
TU79176 other upstream 383788 3397169 ~ 3397496 (-) True G58919
TU79177 other upstream 402246 3415627 ~ 3416854 (-) True G58920
TU79274 other upstream 675248 3688629 ~ 3689338 (-) True G58994
TU79517 other upstream 1410809 4424190 ~ 4430041 (-) False sub1b
TU79519 other upstream 1419463 4432844 ~ 4435068 (-) False LOC120560375

Expression Profile