RNA id: TU79087


Basic Information

Item Value
RNA id TU79087
length 3425
lncRNA type sense_over
GC content 0.44
exon number 4
gene id si:ch211-102c2.4
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3232606 ~ 3240063 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGTTTTGAGCAGTAGCTACCACAGGCTTCAGACTGGCCCCAAAATCCAACAGGCGCCTGTGAGGTGGTGTACTGGCAGAAGCTGACATGTCCCTATGAAGGGAAGCATGAGAGGCTGCTGAGGGTCTGGTGCAGGCAAAGCTCCGCTGACTGCTGCCACGGCCTCGCCTTCAGCCAGAGGCAGCACTCAGTGGATGGAGGTCACCTGAAGGTGACGCAGGGCTCTGATTCCTTCACTGTGGCGCTGCTGCAGCCCAGCCATGGAGAGGGACTGTATTGGTGCGGTGTGCTGAGCACCAACAACACCGTCATCAAGCTGGCTGAAGGCTACTTTCACAGCTCCTTGGCTGCTTACATCTGGAGTTTGACTCGCTGGATTCTGCTGCCTCTGCTGCCCATGGCGACCATATTCGCCACCCTTTACTCCAGAGAAGGCAGCGGAGGAGCGTGGTGATGATGTCACAGAGCTGGCTGATCCACAGTATGAGAACGCAGCGTCTTCCTGTCAGCTGGAATGATCACATGTTCTAGCTTCATTTCAACACGCAGTCATCCGAATCATGCGGTTTTCTTTCAAAGTGTTTCAAGGGggaaattcttttatttttaaagacacAATAAATGTTCTTTATGAAGAAATAAGTTTGCATTTATTGGACAAACCAAACAGAGGCAATCTCACACAGTGTAGAGATGAAACATGTCACGgggtgaaaaataaatgaagggCTTCATTCCAACAGTCATACATCcatttggaaaaagaaaaacatttccaaAGTGCATATCCATTTTCAGAGATGTTTTTACTTTAGACCGCACGATTAGATCTTTGCTGTCTCGATCACTTGATAGGATTTCAGTTAAGTTGTTTCCACACAGTGCATGTATTATTTTTGGAACAAAGCTCTTCAAATATATGCATTTATCTATATACTTTATACATTCTTTTCTTGCTGTACATTTAAGTCTCATGCTTTGCTTGAAACTGTGCTTTCAGCATTCATCCTCAATTCCATgactaaagacaaaaaaaaaaaaaaaaagagcacacaGTATTCAGGATCAATGCTGCATAGTTTCAACTTTGGAATATCAAACATAATGTCTTTGTAAACCAACAGAGTGTAGCCATATAGGTATGGGAGATGGAAACTGTATGAAATCTGTCAAGTTGTCAAAACAAGTTTAAAAATACACAGAATTTCTCTTAGATGCAAAAAAAATGCTTCACTTATTAGAACGTTTTGGTGATTAATGGAAGATACTATAGTGTACGTAGTTCAAATGACCACGTCAATGTTCTTAAAAGCAGTGACGTTAGGAGACGGGAACAACTGGAATCCATGTGTCCAACCGTTTCAGCACAaatcacacaacaaaacaaaatagaaGCAATAAATAACAAGGATCATAAAACCATGAGGAAATCTTGGAAAGGTTACTTACAGAGAAATATTAACATAGTTCCATAATACTCCTTTAGAAGGACAGGTGTTTTGCTGTCTTACGAGAAtcaaagaaaagacaaacagatGTACTGATCCACTGCAATCGTATAGGAGCTCTCAGAGTACCACCAACACGTCACAGTAAGAACACTTCACAATGGTTCATGAGGATAGTGGCTCGGCACTCCCTAGTTGTAACCTCCATTAAGGCAGAATAGCAGAAAACAAGAGGAGAATTTGTATATCGCCCTCCAGGGAGAAGCACAGAAAGGGCCAGTGAGTGAACTGTtttggggagggagggggactTGACTATGTGAAGAAGTCATAAAATCATGTTGCTGACGTCCACACTAAGCCGGCTAACGCGCAAACATTACACATCTTGTGACACTGATTTCAAGATGCTCACGGTCACATTAAGACATCCGAGCCGTACGCTGTTGCTAAGACTTGGCCAAACTACAGTACACATGACTGACTCGCTGTCCCCCCCGGACAGAAAACACATGCTAACGGATGTGAACGCAGAACCTGGAGAGGCTTTCTTCCAggtcttctcctctctctgcctTACCTtgcattaaatgttaaaaaaaataaaataaactgaacCTGGAACAGTTCATGATCACTATGTCTTCTTCCTTCCCAGTCAGTAGAAAGAGGGTGAGTGTGTACATAATGGTTAACATCATGCAACACGTCATACAAGTTTTTGTTCAGAACGTTGTGAAGCGTCCCAGGTGCTGACACAACGAGGGATTCGGAGTGCAACTATCGTGTCCTATGCTAATTTTGGCTCCCGGTGCCATTATATCGTAGTCTAATCTTCTCTGTCCTCTCAAACTGCCTCAGTCTACATCTGGTGAGACAGATGCAGCCCGCTCACTCTGCTGAGTCTCAGTTGGTTCAATCTCTGTTTAGTCCTCGGTCTGACAGAATCTACATTCATACAGATTAATGACTAAGCTGGCATAGCCAGACACGgcctatctattctgggatgGGGGGAACATAGCTTGGACTtgtatgtttttctttaaaccaatcccagcTGTCCTGGTCCTGATAGCAGAGGTAGCGACAGGGGAGGGACATCCAGCCGTGTCTCTCATGTGATGCTTTATCTCAGCAATGTAGATCCGTTGAGCCAGACCAGTTAATGACAAACTGTAGTGTGTGATCAGCTATATGGACACTTGAAATGAGAGTTAGATCATCGTTTCCCTGCTCCGCCCTGAAACACCAGCAAGGTTAAGTGTGGACGGAGGCCAGAACAAAGCAAACGGATTCCACATGCAGCCGGCTTAGCGTGGACGTTCTCCCAGAGCGAAGAAGGGGAAGTGGTTTCAGAGTTCTTAAATCAACTCGCTGTGAATGATTGTTCACGGTTTATATGTAGAGACACAAGACTAAATGTGCCGTTGGCCACTGAAGtagaatgaaagaaaaagacagaagaCTGTCAGTGGTCACTGTAAGCATGCTCTCCATTAGTACACCAACCAGACACAATGGGAACCCTATTTACAGAGTGGGTCACTGGTATATCAAATCAAAGGAAATATGGAGCCAACTTATTCAGTCATGTCAAAGTACAGAGAGCCAATCATCAGATTTTAATGTCACGACCCTACAGTTCCCGGGGGTCTCCTGGCTGTTTCCTATTGGCTGGAATGGAAGTGACAGCAGTAGTGCAGATGTGGAGTCACTCAGAAGGAACAGACAGGTACCAGAGGGAGTGCGTATGGCTTGGAGATGCTTTATGCTTCCGTTCCTGATGGAACAGGAGCGCTTATAGTTCTTCATAATCGCCGTCATCTCTTTTGATCGAGCCTGCTCCTCCGCCCAGAAAGTCCTCCAACTCGTCCACCTCCGTTTTCTTGGTCCgggatttcttcttctttttctcgtCTCCTGCTGCGTCTtcgtctttttcttttttcttgtgtttgtgtttcttcttGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79048 lncRNA downstream 71398 3161885 ~ 3162127 (-) True G58818
TU79039 lncRNA downstream 180074 3049669 ~ 3053451 (-) False tnc
TU79022 lncRNA downstream 220144 3011390 ~ 3013381 (-) True G58807
TU79023 lncRNA downstream 220171 3011390 ~ 3013354 (-) False G58807
TU79020 lncRNA downstream 234110 2999199 ~ 2999415 (-) True G58806
TU79098 lncRNA upstream 6018 3246081 ~ 3246397 (-) True G58852
TU79181 lncRNA upstream 195149 3435212 ~ 3467122 (-) True G58922
TU79190 lncRNA upstream 247900 3487963 ~ 3488550 (-) True G58931
TU79191 lncRNA upstream 249742 3489805 ~ 3490230 (-) True G58932
TU79192 lncRNA upstream 250657 3490720 ~ 3492557 (-) True G58933
XM_039804434.1 mRNA downstream 21526 3196486 ~ 3211999 (-) True traf2a
XM_039804414.1 mRNA downstream 98976 3050850 ~ 3134549 (-) True tnc
XM_039804443.1 mRNA downstream 185723 3045676 ~ 3047802 (-) False b3galt8
XM_039804442.1 mRNA downstream 185772 3045676 ~ 3047753 (-) True b3galt8
XM_039804439.1 mRNA downstream 191269 3015609 ~ 3042256 (-) True zgc:162952
XM_039804453.1 mRNA upstream 32388 3272451 ~ 3293307 (-) True LOC120561362
XM_039804436.1 mRNA upstream 71004 3311067 ~ 3315203 (-) True LOC120561352
XM_039804437.1 mRNA upstream 71004 3311067 ~ 3315063 (-) False LOC120561352
XM_039804438.1 mRNA upstream 71004 3311067 ~ 3315038 (-) False LOC120561352
XM_039804424.1 mRNA upstream 75753 3315816 ~ 3354947 (-) False LOC120561346
TU78857 other downstream 541003 2690610 ~ 2692522 (-) False LOC120561394
TU78855 other downstream 544676 2686676 ~ 2688849 (-) False si:ch211-107p11.3
XR_005639531.1 other downstream 640779 2577875 ~ 2592746 (-) False ggt1a
XR_005639512.1 other downstream 1093897 2137796 ~ 2139628 (-) False ankrd39
XR_005639501.1 other downstream 1575478 1532053 ~ 1658047 (-) True rimbp2
TU79176 other upstream 157106 3397169 ~ 3397496 (-) True G58919
TU79177 other upstream 175564 3415627 ~ 3416854 (-) True G58920
TU79274 other upstream 448566 3688629 ~ 3689338 (-) True G58994
TU79517 other upstream 1184127 4424190 ~ 4430041 (-) False sub1b
TU79519 other upstream 1192781 4432844 ~ 4435068 (-) False LOC120560375

Expression Profile