RNA id: XM_039804448.1


Basic Information

Item Value
RNA id XM_039804448.1
length 1273
RNA type mRNA
GC content 0.45
exon number 5
gene id si:ch211-102c2.4
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3232606 ~ 3240063 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCAGTAGCTACCACAGGCTTCAGACTGGCCCCAAAATCCAACAGGTTATTATTAAGATGTGTTACGAGTACATTCTAGATtccattcctattttcataacctgactgcagcatacaatttattatttaaaacataacacgtaagcatggttttaacatGTTACAACCTAACAGAAGGTAGGTCAAAGAAAAGGCTATCAGGCCCGAGTGCAACTGCACTGCCTAcactttctgtatttatttctgcatgaaGACAGATCACTATCTGTGTTGGTGAGGCATTTCCTGAAGCTCTGTCATCTAAAAAAGCAGCTTCTCTCCGTATTTACTATCCAATTTGAGTGTAACCACGTTCAGTGCTTGGATTATGCATCTTTTGAGTTTGTTATTGCTTTTGACTGCAGGCGCCTGTGAGGTGGTGTACTGGCAGAAGCTGACATGTCCCTATGAAGGGAAGCATGAGAGGCTGCTGAGGGTCTGGTGCAGGCAAAGCTCCGCTGACTGCTGCCACGGCCTCGCCTTCAGCCAGAGGCAGCACTCAGTGGATGGAGGTCACCTGAAGGTGACGCAGGGCTCTGATTCCTTCACTGTGGCGCTGCTGCAGCCCAGCCATGGAGAGGGACTGTATTGGTGCGGTGTGCTGAGCACCAACAACACCGTCATCAAGCTGGCTGAAGGCTACTTTCACAGCTCCTTGGCTGCTTACATCTGGAGTTTGACTCGCTGGATTCTGCTGCCTCTGCTGCCCATGGCGACCATATTCGCCACCCTTTACTCCAGAGccATAACAAAACACACTCTGACGAAGGCAGCGGAGGAGCGTGGTGATGATGTCACAGAGCTGGCTGATCCACAGTATGAGAACGCAGCGTCTTCCTGTCAGCTGGAATGATCACATGTTCTAGCTTCATTTCAACACGCAGTCATCCGAATCATGCGGTTTTCTTTCAAAGTGTTTCAAGGGggaaattcttttatttttaaagacacAATAAATGTTCTTTATGAAGAAATAAGTTTGCATTTATTGGACAAACCAAACAGAGGCAATCTCACACAGTGTAGAGATGAAACATGTCACGgggtgaaaaataaatgaagggCTTCATTCCAACAGTCATACATCcatttggaaaaagaaaaacatttccaaAGTGCATATCCATTTTCAGAGATGTTTTTACTTTAGACCGCACGATTAGATCTTTGCTGTCTCGATCACTTGATAGGATTTCAGTTAAGTTGTTTCCACACAGTGCATGTATTATTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79088 lncRNA downstream 2389 3232606 ~ 3233661 (-) False si:ch211-102c2.4
TU79048 lncRNA downstream 73923 3161885 ~ 3162127 (-) True G58818
TU79039 lncRNA downstream 182599 3049669 ~ 3053451 (-) False tnc
TU79022 lncRNA downstream 222669 3011390 ~ 3013381 (-) True G58807
TU79098 lncRNA upstream 6027 3246081 ~ 3246397 (-) True G58852
TU79181 lncRNA upstream 195158 3435212 ~ 3467122 (-) True G58922
TU79190 lncRNA upstream 247909 3487963 ~ 3488550 (-) True G58931
TU79191 lncRNA upstream 249751 3489805 ~ 3490230 (-) True G58932
TU79192 lncRNA upstream 250666 3490720 ~ 3492557 (-) True G58933
XM_039804434.1 mRNA downstream 24051 3196486 ~ 3211999 (-) True traf2a
XM_039804414.1 mRNA downstream 101501 3050850 ~ 3134549 (-) True tnc
XM_039804443.1 mRNA downstream 188248 3045676 ~ 3047802 (-) False b3galt8
XM_039804442.1 mRNA downstream 188297 3045676 ~ 3047753 (-) True b3galt8
XM_039804439.1 mRNA downstream 193794 3015609 ~ 3042256 (-) True zgc:162952
XM_039804453.1 mRNA upstream 32397 3272451 ~ 3293307 (-) True LOC120561362
XM_039804436.1 mRNA upstream 71013 3311067 ~ 3315203 (-) True LOC120561352
XM_039804437.1 mRNA upstream 71013 3311067 ~ 3315063 (-) False LOC120561352
XM_039804438.1 mRNA upstream 71013 3311067 ~ 3315038 (-) False LOC120561352
XM_039804424.1 mRNA upstream 75762 3315816 ~ 3354947 (-) False LOC120561346
TU78857 other downstream 543528 2690610 ~ 2692522 (-) False LOC120561394
TU78855 other downstream 547201 2686676 ~ 2688849 (-) False si:ch211-107p11.3
XR_005639531.1 other downstream 643304 2577875 ~ 2592746 (-) False ggt1a
XR_005639512.1 other downstream 1096422 2137796 ~ 2139628 (-) False ankrd39
XR_005639501.1 other downstream 1578003 1532053 ~ 1658047 (-) True rimbp2
TU79176 other upstream 157115 3397169 ~ 3397496 (-) True G58919
TU79177 other upstream 175573 3415627 ~ 3416854 (-) True G58920
TU79274 other upstream 448575 3688629 ~ 3689338 (-) True G58994
TU79517 other upstream 1184136 4424190 ~ 4430041 (-) False sub1b
TU79519 other upstream 1192790 4432844 ~ 4435068 (-) False LOC120560375

Expression Profile