RNA id: TU79146



Basic Information


Item Value
RNA id TU79146
length 1626
lncRNA type sense_over
GC content 0.42
exon number 1
gene id LOC120560521
representative False

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3435165 ~ 3522756 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ATGACAATGCCtgtgtatacatacagtatatatctatatatagtcTATCTAGTAACACTGGAATTTGTTACAATTTTTTGAAGTGCCTTTTACTTTCTTAGTCCCATGAGGTTCGGGTTGTCTTTCCTCCACCCCTCAGCCACCCAGCCGTACTAAAACCTCTGCTGCTGTCAAGCTTCAAGGGAAACCAGGGAACCAGTGACACCAAATCTCAATGCTGTCCCCCCTTCACACACCGTACCGTCTGCTGTCACCTCCAGGGGCAAAACACACACCCTGCAGCCAGTATCTCAGCCATGTGTAAGAAAGGGCAAACGCTGTCTGATCTCTAGAGTCCAATCAAGAACAATATCAGTCTAATTAGAGTCTAATATTAGAGTCAAAGTTGTAATCTGTAAAGGCCCTGTCACTCCAGCATTAAACAGTCCAAATTCTTCCATTTTGTAAACTTAACACATGTCATTACCCAATAGTGAATTGTCTTGACTGTTCAGATCTTTAAAAGGAatagacagccagagagagaagaagataTAATTTAACGGTTATTAGCTGTGTTGAACTTTTATATAACTTCGTCTGTCAGAGTACTATCCAGCTCTCTGAATACATTCATGAGCTAGCTCTGGTTAGTCCTGTGAACAGTCACTGCGTCACCAAAGTTCTAGCACCACCTATTTTACTAGGATGTGCAATGAATTTTGCTGTGCCACTTTCTGGTTTGACTGGGCCTTGAGATCTCGTAATTATTGGCGTCTTTGATGCTCAGCATGCTGTTTTTGCCCTGTACCTCTCAGCCAGAAAGGATTTGCTAGTCGTAACTGTGTGGCCAGCAGCGTGATGTCTTTTGCCTTGGAGTGTTTTGTCGATAAAGTTTCTGCAGGTGGTGCCCTCTTCTGTCTGTTCAGCCATGGTGGCTATCACTGCCTATGCTAACACCCTGTTAAGTGATAAGGTTGGTGACATTCTATATTGTCTTATGGTCAGCCAATCCCATGTTTCCAGCCAAACCAGCAATGAATGTAtctactaacaagtattgtcATTGTTGATATATCGTATTCCTCTGTCATAGAGCTCCGTTGTTGGCCAACACCTTTTAGAGACTAGACTCTAAAAGGTGTTGgccaccaaatgtggattaatccgctgctgaaaatagtccccaacaaatgcactatttcctcCTGTGTGAGTAGCATTTGTTAAAAATTACAGTGttcagctgttttaggaaactatatatttgtgagcctttttaatagaaaaataacCAGAAAGGAAgcagaaagtattgagagatAGACTAAAGCGGTGTTGACTATGGTCTTTATCTATGTGACAATAAGAAGAATATAGAATAACACCAGCCCTATCTTTTCAAAGCTGTGCCCCATGAATAAGAGGAGCAGGATCAGCCCTCTGAACGGATGAACTTGCTAGGGGGCCATTAGGCGTTGGGCCTACATTCTACTACTCTTCAAGAACTCAAGACCAATAAAACAGGACCCCTTTGAAGGCCCTTATCATGTCATTTGATTATGTGGTGCATATTCCCAAATTAATTTCCAATGAGATTAGCTCAAACAAGTTGACATAGTTAGCTTTCAGGGCCCCCATGgtggt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU79156 lncRNA upstream 16382 3504451 ~ 3504749 (+) True G58900
TU79155 lncRNA upstream 25232 3495104 ~ 3495899 (+) True G58899
TU79154 lncRNA upstream 31039 3489791 ~ 3490092 (+) True G58898
TU79149 lncRNA upstream 105715 3415104 ~ 3415416 (+) True G58893
TU79148 lncRNA upstream 123341 3397153 ~ 3397790 (+) True G58892
TU79200 lncRNA downstream 90 3522846 ~ 3523621 (+) True G58941
TU79205 lncRNA downstream 25052 3547808 ~ 3556179 (+) True G58944
TU79211 lncRNA downstream 83306 3606062 ~ 3606309 (+) True G58948
TU79263 lncRNA downstream 276282 3799038 ~ 3803097 (+) True G58986
XR_005639569.1 lncRNA downstream 314551 3837307 ~ 3837679 (+) True LOC120561177
XM_039803127.1 mRNA upstream 614 3464331 ~ 3520517 (+) False LOC120560521
XM_039804455.1 mRNA upstream 137551 3375881 ~ 3383580 (+) True fxn
XM_039804454.1 mRNA upstream 149631 3358143 ~ 3371500 (+) True hmgcra
XM_039804415.1 mRNA upstream 251024 3247454 ~ 3270107 (+) True zfr
XM_039803133.1 mRNA downstream 2551 3525307 ~ 3547333 (+) True fam189a2
XM_039803134.1 mRNA downstream 2551 3525307 ~ 3547333 (+) False fam189a2
XM_039804121.1 mRNA downstream 107980 3630736 ~ 3675225 (+) True mamdc2a
XM_039803625.1 mRNA downstream 165289 3688045 ~ 3775673 (+) False arid3c
XM_039803627.1 mRNA downstream 165289 3688045 ~ 3773518 (+) True arid3c
TU78941 other upstream 641387 2878401 ~ 2879744 (+) False lman2lb
TU78000 other upstream 3308761 210742 ~ 212370 (+) True LOC120560799
TU79382 other downstream 594523 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 901385 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 909415 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 909912 4432668 ~ 4432739 (+) True trnaq-uug_2
TU79509 other downstream 1007354 4530110 ~ 4531165 (+) False mrpl41

Expression Profile