RNA id: XM_039803125.1


Basic Information

Item Value
RNA id XM_039803125.1
length 5123
RNA type mRNA
GC content 0.55
exon number 24
gene id LOC120560521
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3435165 ~ 3522756 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTAGGAAACAGAGGCAGGGTGGATAAGTGCCTTCTCCTGTGGGAAGCTGACTTTGGTTGTGATGCCGTAAACTACCAAGCTGAGCTGGACCATGCTGGAGCAGGATTCTGCTAGTCAGAGCTGTGGTTTTGGCAGGGTGGGGGGGCCACAGCCGCAGAGGACGCTCTACCGTTAGCCATGAGTCTGGCGTGGCTCCCGCGCGGCTGCTGCGCCGGCTACCCCAGCTGGCATCGCTGCAGGCTGGCTGGGACAGGCAAGATCGCGGCCTCAGATGGTTGCAGGCAAGGGGGAGGCAGCAGCGACGGTGGGGGGGCCAGGATCCAGCTGAGGGGGCTGGACACCGAACACCTGAAAGGCAGCCTGGTGGTCCTCTACGCACCTGCTGGGAACTCCTGTCTGCTCAGATTGAGCTCAGGGATGGAGGAGATGGTCTGGGAGCAGTACACAGTCAACCTGCAGCGGGACTCCAAGATGGGTTTTGGCATCGCTGTGTCAGGTGGGCGGGACAACCCCAACGTGGACAATGGTGAGACGTCAATCATCGTGTCAGACGTGCTGCAGGGAGGACCAGCTGATGGATTACTCTTTGAGAATGATCGTGTCATTCAGGTCAACTCCATCCCCATGGACAACGTGCCTCACTCCTTTGCTGTGCAGTCCCTTCGTAAATGTGGTAAAGTGGCTAAAATAACGGTGAAGAGACCTCGTAAGGTCCACTCACTGAAGCAGCCCCCCTCCCCAGGCGGAGACAGTCGGGAGTACGCCCCCTCCACCCACTACTACGACGCCGACAATGACAACGGCTGGTACCGCGACGAAGGCCGGGACCACATCGCGGACAGCAAAGGATACCTGGAGCCCGAGTACAGAGGAGGGCGGGACACCAACCAGAGAGGAAGGAGCCGCGGGAGGAGCCATGAGAGAAGCTCGCCCAGCCCGGAGAGATCCCGCAGGGAGGGCAGCCGGGGGCGCGCCCTGGACACCAGCGCCGACCGCCAGCGGTACCCCAGCCGCGGCCGCAGCCCCGGGGACAGCTACCGCATGGAGGACAAGTATGAGCGGGgcgaaggaggaggaggaggaagaggaggcaggTACAGCAGCAGGGACCAGCTCAACGACAACCCACCATCCCCAGAAGCTTCCAGAGCGCTGGAGCCGCTGGACAAACCCGTCAACGTCCTGCTGGTGAAGAACAGACCCAGCGAAGagtacGGTCTGCGTCTGGGGAGTCAGATCTTCATCAAACAGATGACCAGCACAGGCCTGGCTGCCAAAGACGGGAACCTGCAGGAGGGAGACATCATTCTCAAGatcAATGGGACAGTGACGGAGAACCTCTCTCTGCACGATGCTGGGAAGCTTATAGAGAAGTCGCGGGGGAAGCTGCAGCTGGTGGTCCAGAGAGACCGCCGTCAGATCCTGGTCCGCATCCCCCCCCTCGCAGACTCTGACTCTGATAATGATGacaTATCAGAGATGGAGTCATACCATTCCTATTCTCCCCCAGAGGAGAGGAGGTCCCGCCAGTCTGACCTGTCCTCCCACTCTTCTAATGAGAGAGACAACCCCAGggAAGAACCCATGAGAACAGCCAAGATGTCAGCCATGGCCTCCCCATTCCGAGTCCCTGAGGACCCCCAGGCGTCTGCTGAGCTGAGCAAAGACACCGCGCACATTGAGGAGCCTCCAGTTGCTGTAACAGCCACGCCCAAGATTCTCCTCCGACCAAGTCCAGAAGATGAAAAAATATATGGGCCCAACACAGTGATGGTGAATTTCCAGAAGGGAGACAGTGTGGGGCTGAGGCTAGCAGGAGGAAATGATGTCGGCATCTTCATTGCTAGTGTTCAAGAGGGCAGTCCTGCTGAGGAAGAGGGCCTGCGCATCGGAGATCAAATCCTAAAGGTGAACAATGTCgattttcaaggtgtagtgagAGAGGAAGCAGTGCTCTTCCTGCTGGAGATTCCTAAAGGGGAAGTGGTCACCATCCTGGCACAGAGCAAACCTGACGTCTATAATGACATCTTGGTGTCGGGGCGGGGAGACTCCTTCTTCATCCGGACTCACTTTGAGTATGAGAAGGAGACTCCTCAGAGCCTGGCCTTCAGCCGGGGGGACATCTTCAAGGTGGTGGACACCCTCTATGATGGCAAGCTCGGCAACTGGCTGGCAGTCCGTGTTGGcaaggacaagcagctgctggagAAAGGCATCATCCCCAACAAGAGCAGAGCGGAGCAGATGGCCAGTGTCCAGAACTCTCATAAAGCTGTTGCGGGCGATCGAGCGGACTTCTGGCGGTTGCGAGGTCAACGTTCTTTGAAGAGGAAGGACCTGAGGAAGAGCAGAGAAAACCTGAGCGGTCAGACACTGGCCACCCGCTTCCCAGCGTACGAACGAGTGGTGCTCCGAGAAGCGGGTTTCCGGCGTCCTGTGGTGCTGTTCGGCCCCATCGCAGACGCAGCCAATGAGAAGCTGGCCTCTGAGATCCCCAACCTGTTTGTTATTGCCAAAACCGAGCCTAAAGACGCCGGATCTGAGAAGTCCTCAGGAGTGGTCCGCCTGAACACCATCCGACAAATCATCGAGCAGGACAAGCACGCCCTGCTGGATGTGACACCCAAGGCAGTGGACACCCTGAACTACACCCAGTGGTACCCCATCGTCATCTTCTTCAACCCCGACAGCAAGCACGGCATCAAGGCCCTGAGACAGAGGATCGCCCCCAACTCCAACCGCAGTGCCCGCAAACTGTACGAACAGGCCGTCAAACTGAGGAAGACCTGCTCTCACTTATTCACTGCCACCATAGATCTGAACTCAGCCAACGACGCCTGGTACGGCAGCGTCAAAGACTCTATCAGAGAGCAGCAGATGCAGGCTGTGTGGGTTTCTGACGGCAagCTGGAGGGAGTAGAGAGTGATCTGGACTGCCAGGACGTGGAGCGCCTGTCCTTCCTGTCTGCCATGTCGGCCGACTACCTCAGCATGGACAGCcggctgacctctgacctcgaCGACACTGCCGACGAGGGCGGGGCCTACACCGACAACGAGCCCGACGCGGAGATGATGCACATCTCCGCCATCAGCCGCTCGTCTGAACCTGTCACAGCTGAGGAGatcttGCGCAGGTACAGTCCAGACATCAGGAGTCGATTGAGGAAAATCAGCAGCCGTGACGTCCTCAACAGGTCCAGCCCTCCACCTGTCTTCTTACAAGACAGCAAGCTCTTTACCTCCACCCAAAGGAACAAACTGCCCTTCCCTTTGAGGAACGGCCTGATATGGAGAAACCACTCTCCCTGCAGTTCCGAGTCCTCCGACCTCAGCTCAGTGGACCAGATGGGTACCCAGAATCCCCCTCACTTATTGGTGAAACTGTCTCTGAGGGACGACTCCAGCAGCCCACGCCATCACCACAGGCAGCACCACCCTCCACCCCCCAGCTCCAGTCGAAGTTACGATTCTCCGTCCAGCAGCAGCCCCGCCAGCAGCAACAACGACCCTCCGCCACTCATCCCCCGGTCGGCTGCCTCCTCCGGCCCGCTCCCTCCGGCTCACCACTTCAACTCCTGTAGCAAACTGTGGCCCCCGGGAGCGCCCCATTCCCCCGCCGCGCCCAGGCCCGGCAGTGGCGGGAACACGGTGGAGGCTTCACTTCACTCGCCCGTGCCTCTGCCCAGTGCAACGGGCTGTAGGCAGCAGGAGGAGGCAGCCAAGGACAGCCCTGTGGACGATCCGTCCTTGAGGTCCTTCCTGGGGAAGATCAAGGCCTTCGAGAAGATGGATCACTTCGCCCGAGCCCAAAGGATGCTGGAACTGCAGGAGGCGCAGAATGCCAGGTTGGAAATTGCCCAGAAGCACCCAGACATCTATGCTGTTCCTCTGAAGACAGCCAAGCTGGATCACAGTCGCCCACAGCCTATCGGCTCCAGCTCCCGTCCTGAACCGCAGACTCCTCCGTCCTCCAAGGAGGGACGTCCCGTCTACCCCAGCCAAGAGGAGGCAGAGTCAGAGGCAGTGCCGGGATACTACACCGCCAACTCCTTCCAGTACCAGGACACCCAGCTGTAGGCTCAGCACACAGCAGCTGTGGCCGCCCTCGGCTTCCTGGACGTACATGTACACCACGCACTGCATAAGCAGTCTATTTACACACATACCATTCCATCATGCCCTGCACAAGTAAGCTGCTGACTTTGAACCGACTCTCGCTTCTTTGATATTAAGGGGgggaaaattattttttttggttcaTGGAAGTTAAAGCAATCTGTGCTATCCATTTGGATAGGAACACACTATATTAACTTTACTTTTGATGTTGTATTTGATTGCTTTTTTCTTACCTACCACTTTTAAAGGTCAAAACTGAGTGATTAGGAACCACTTGTTTTCTTGCCTATGCAACTCTTCAGTTTTTTGCACAGCAACTGAAACTTAATGCCACAAGTTTTGCCCTCACAAAAAACCTCAACAAACCTAAAAACCACAATGCGCTTTATCACATCTattcctttcttttttaatctCCTATTATTGCCagctatataatatatatatatatatatatataaataaataaatatattattacatacaacaaatatatgtatatatacatatataaatgtatttaaagtcaAGTGTTTATACTCTGTATTTGCATTCCTTCGTATATGACAATGCCtgtgtatacatacagtatatatctatatatagtcTATCTAGTAACACTGGAATTTGTTACAATTTTTTGAAGTGCCTTTTACTTTCTTAGTCCCATGAGGTTCGGGTTGTCTTTCCTCCACCCCTCAGCCACCCAGCCGTACTAAAACCTCTGCTGCTGTCAAGCTTCAAGGGAAACCAGGGAACCAGTGACACCAAATCTCAATGCTGTCCCCCCTTCACACACCGTACCGTCTGCTGTCACCTCCAGGGGCAAAACACACACCCTGCAGCCAGTATCTCAGCCATGTGTAAGAAAGGGCAAACGCTGTCTGATCTCTAGAGTCCAATCAAGAACAATATCAGTCTAATTAGAGTCTAATATTAGAGTCAAAGTTGTAATCTGTAAAGGCCCTGTCACTCCAGCATTAAACAGTCCAAATTC

Function

GO: NA

KEGG:

id description
K05701 TJP1, ZO1; tight junction protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79149 lncRNA upstream 48915 3415104 ~ 3415416 (+) True G58893
TU79148 lncRNA upstream 66541 3397153 ~ 3397790 (+) True G58892
TU79049 lncRNA upstream 298490 3165613 ~ 3165841 (+) True G58819
TU79047 lncRNA upstream 308036 3156062 ~ 3156295 (+) True G58817
TU79007 lncRNA upstream 390099 3073663 ~ 3074232 (+) True G58793
TU79200 lncRNA downstream 1282 3522846 ~ 3523621 (+) True G58941
TU79205 lncRNA downstream 26244 3547808 ~ 3556179 (+) True G58944
TU79211 lncRNA downstream 84498 3606062 ~ 3606309 (+) True G58948
TU79263 lncRNA downstream 277474 3799038 ~ 3803097 (+) True G58986
XR_005639569.1 lncRNA downstream 315743 3837307 ~ 3837679 (+) True LOC120561177
XM_039804455.1 mRNA upstream 80751 3375881 ~ 3383580 (+) True fxn
XM_039804454.1 mRNA upstream 92831 3358143 ~ 3371500 (+) True hmgcra
XM_039804415.1 mRNA upstream 194224 3247454 ~ 3270107 (+) True zfr
XM_039803133.1 mRNA downstream 3743 3525307 ~ 3547333 (+) True fam189a2
XM_039803134.1 mRNA downstream 3743 3525307 ~ 3547333 (+) False fam189a2
XM_039804121.1 mRNA downstream 109172 3630736 ~ 3675225 (+) True mamdc2a
XM_039803625.1 mRNA downstream 166481 3688045 ~ 3775673 (+) False arid3c
XM_039803627.1 mRNA downstream 166481 3688045 ~ 3773518 (+) True arid3c
TU78941 other upstream 584587 2878401 ~ 2879744 (+) False lman2lb
TU78000 other upstream 3251961 210742 ~ 212370 (+) True LOC120560799
TU79382 other downstream 595715 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 902577 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 910607 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 911104 4432668 ~ 4432739 (+) True trnaq-uug_2
TU79509 other downstream 1008546 4530110 ~ 4531165 (+) False mrpl41