RNA id: TU79154


Basic Information

Item Value
RNA id TU79154
length 302
lncRNA type intronic
GC content 0.53
exon number 1
gene id G58898
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3489791 ~ 3490092 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atttattcaggggaggttcactgagaggcagcctctctttcgcaggaacgccctgatcacattcacacagttccacattcatacctggacgctgcccagtacaaccacagtctgatctgctggccactgagcagctccactggagcggttggggttaagggccttgctcaagggcacctcagtggtggtaatgagggagggacaagtgctgttctttcactttccccacccagattttatcctgttggattgggattgaaccgacgacctcacggtcacaagctcgcttctctaacctttag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79149 lncRNA upstream 74375 3415104 ~ 3415416 (+) True G58893
TU79148 lncRNA upstream 92001 3397153 ~ 3397790 (+) True G58892
TU79049 lncRNA upstream 323950 3165613 ~ 3165841 (+) True G58819
TU79047 lncRNA upstream 333496 3156062 ~ 3156295 (+) True G58817
TU79007 lncRNA upstream 415559 3073663 ~ 3074232 (+) True G58793
TU79155 lncRNA downstream 5012 3495104 ~ 3495899 (+) True G58899
TU79156 lncRNA downstream 14359 3504451 ~ 3504749 (+) True G58900
TU79146 lncRNA downstream 31039 3521131 ~ 3522756 (+) False LOC120560521
TU79200 lncRNA downstream 32754 3522846 ~ 3523621 (+) True G58941
TU79205 lncRNA downstream 57716 3547808 ~ 3556179 (+) True G58944
XM_039804455.1 mRNA upstream 106211 3375881 ~ 3383580 (+) True fxn
XM_039804454.1 mRNA upstream 118291 3358143 ~ 3371500 (+) True hmgcra
XM_039804415.1 mRNA upstream 219684 3247454 ~ 3270107 (+) True zfr
XM_039803133.1 mRNA downstream 35215 3525307 ~ 3547333 (+) True fam189a2
XM_039803134.1 mRNA downstream 35215 3525307 ~ 3547333 (+) False fam189a2
XM_039804121.1 mRNA downstream 140644 3630736 ~ 3675225 (+) True mamdc2a
XM_039803625.1 mRNA downstream 197953 3688045 ~ 3775673 (+) False arid3c
XM_039803627.1 mRNA downstream 197953 3688045 ~ 3773518 (+) True arid3c
TU78941 other upstream 610047 2878401 ~ 2879744 (+) False lman2lb
TU78000 other upstream 3277421 210742 ~ 212370 (+) True LOC120560799
TU79382 other downstream 627187 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 934049 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 942079 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 942576 4432668 ~ 4432739 (+) True trnaq-uug_2
TU79509 other downstream 1040018 4530110 ~ 4531165 (+) False mrpl41

Expression Profile