RNA id: TU79263


Basic Information

Item Value
RNA id TU79263
length 4026
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G58986
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3799038 ~ 3803097 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCACAATTTAAAATGCTGCAAGTTTACAGATACAGGAAAACAAAGACAATTTTGTAATAAACCATCTTGTTATAAACCTCGTGAGTACTTTTCTCGGAGTCTGTTAACATGGTGTCACAAGAGAAAGGTCCAAGTGATCTGGGTTGTGTTTCAAAGCCCATAAAGTGTGAAGAgtacaaaataaagaaatatccACATCACCAACATCTGGCCGCAGGTGAATAGAGACGGAGTCAAACGTCTAATCagtagggatgggcatcgtttggattttaacgattctgattccaattccgattcttcctttcgattccggttcttatcgattctcgattccgattctttgagtggtggagttgaaacgggttagatgcttatttcacaaataagaggaaagttttattttgaatcataggtgggttgcagttttacagcttttacaatgcaaaataaagccacactagagctccgGTTACTGTACAACACAACAAGTGCCTGGCttctacggaaaccaaaacttgcgcatattaaatttggaacctatgatcagatttgaaaccaaatcctccaaacgattccaataaagaaactattccaatggaatcgtaatttttgaaacgattccgattaggaatcaGTTCTCGATCCCCAACCCTACTAATCAGTAATTCCACAAAGCAGTGACCTCTATGCAAACACTAATGCAGGGTTTCTTCTatcggatgttttttttttacttcaaggGTTGGTTCACCAAAATTACAAAATCATATTTTCTAACCTCCCACCAGCGCTATCTCTACATGCAGATATAGTCTGGGTTTTAAGATTCCTGCCTCTACCCCAATACAATGGAAGAGAATGGGATTCTGTTTCCATAGTTCTAATCAAGATTGTCTCCAGACTAACAGGGAAACTGCTTCTGGAAAAAATGTGTTGAATTTTTGCAATGTCATTTGTCAACTGATTTCCAAGTGAGTGATATCTCAGAGACAGACATCTCAAAACCTGTTCACATAAACTAAAACCATCCGCATAAATGGGATACAACTAAAGCTAAGTGAGTTTgtgttttgtaatttgggtgaactgttATCACAGCCTTAACATGGAAACTGCCAACAGTCATTAGCATGATTGAATTAAACAGATACATTGATGTTATACATTAGCCTAACCTTTACATCACCATCTGTATTTCAGTCagggattttaactgttgtTTCTATGCACCGGTATTTTAATTCACTCAGTCCGTCAAGCCCAGAAAAGTGGAGTGTAGGTCCCTGAGATTGAGCTCCTGATGGCCGTCAGTCCACATGCACAGCAAGCAGTCCAGATAAGATAATGTAGGTGTGATACAGTAGCTGCCCTGTGTATCCTTCTTTATCTTACTAAGTGGTGACAACTTTGAGAAAGGAAATGTTCATGTACATCCATCCCAAACTAACACACAGCATCATCAACATACAACAAAGTCCAAATACAGCAGAGGCCAGCGCTCAGAGGAATTACAGAGAGGACTTTTAAATATTAACTGAAGAGAACATAATCTGACTTTTGGCAGCATGAACTTTTTCGGATATTTTGCACCAACTTAGAGGCAAACATACTCTTTCATTCACATTATGTTCAAATTCACTGAACCGCCTCATGCTTGTCTAACGTgtgtacttttcttttttttggagcAGAGCTGCTCGGGAACACAAAATTAATTTCAGTGTAAACTAATAAAGTTGATTTGTATGAGAGTCAAAACTGATGGAAGCAAGGAACAGTTAACATTTTGGGAACTAAACTTGTTGACTTTCTTTCTGAGCATAAGATGAGAAAATGAATATTAATCTCATGTCTGTTTTAAGCACAGAGCTGGAGTCAGGacgtggttagcctagcttagcataaagactggacagAGGAGGAGACCGCTAGCTCGGGGCAAACACAATCTGTAGTTCATACATTTCCGTTTGTGTAAGGAGCACACAAATGGGACATATTCATCAGTGAGCTTTGGAGGTGTTGGTAGGACAGAGCCCTGCTTCCAGCCATGCTAAGCTAGGCTTACCATGCCCTGACTCCAGGTCTGTACTTACAGACATTAGATTGATATCCATCTGAACATCTCAATCACCGCAAATGAGCATAATCGCCTGAGTTTTGAACTATTGCTTTAAGTATATTTATCTTCAAAATCATGTTTACAACTTATATAAGCCAATAAACCACCATACACAAAAAAGGGATCCAATTTGGGAGGCAGAGCATACCATCTTAGAATCATTTATGCAGCATCTGAACTACATTGACAACTTTATTTAACCTAACATGAGTTAAATTATTGCTCTGACTAAATGACAAAAGGAACATTTTACATTGGTTTGCCATGAAAGCTGCCCTGTAATCAACCTCACTGAAGAACTGACAGCTGTTAGAACCAATGAAAACATCTCAATTACTGACCTGCCGACCATGTTCACAGTCAACAGTATGTTTATCAGTCTCTCATCTAACCGTTAGTTTGCTTGCATGGTTGTTGTGTGAAACAAAGTCTTGCTGAGAGCAGTGAGTTCACGCTCGTCTTCCATCCGTCCTGACTCTGCTCCATGCTAACCAGGCCAGGAGAGGCTGAAGTCAGAGTCACGTGTATGTTCAAAGAAACAAATCGGTATAAATGAGGAGCTCAATGCTCTAAATATTTCCAACACTGGAAcaactgggggaaaaaagtatAACAGACATCTTTCTGCCAGGAAGACCTCTACAGAGCTGAGCATGGAAGAGTTATTGTAATATTTCTACACCTATATATGGGAGGCCAAAAGACTAGCTGCTCATGTCATAATGATACTGTATGATGGCATACTACTGATTAAAGTTCCCCGGgcaatattttttatatgaaGACTAAAATAAAATGACTCCCTGTAACATGAAAGGATTGCCAGTTCCACTGATACCACCGAGCGTCTGCTCCCTGCATGGCACACAATGGCACAGAGCAGACTCTATGAGTGGTGGGTAAAGAGAGCAACCAGAGGGATACAGAGACTAAAACAAGGTTAAACACTGGGGAAATGTTGGACTTAAGccaggctaaaacaatggagAAATACTGGACTAAACCAATTTCTAAAACACTGGGGATATATTGGACTAAACCAATGCTATAACAATGGGAAAATATTGGACTAAACAATTACATTTCAGTTTAAATAAACGTTTTGCTGTTTTGTCAGGGTTGAACGTGCCCCAGGGAATATTGGACTAAACTAAGGCTGAAATACCTGGCAACAATGGACTAAACCAAGGCTGAAATACCAGGGAATATTGGACTAAACCAAGGCTGAAATACCAGGGAATATTGGACTAAACCAAGGCTAAAACACCAGGGGAAATTGGACTTAACCAATGCTAAATCCTTCCCATTGTTTAGATCGAATGTGATTAAGGTAAGTATGGCAGCACACGAGAATATTTCCAAATCAGAATCCGAATGAAATGTTAAAGTCAAGAGTACTTCAAGAGAAATGACAATACACTGACATACAATATTGTCCTTGGGCATCAAACCATTTATCGTCCTACCATAGCAGATAGGATGCCAAACCCATTtgcaagtataaaaaaaaaaaaaaacaacatgccTGGATACAGTTTTTTAACATCATGAAATTTTCCAGGCCAGCAAAGAACTCATGTATACCAATCTGGGTGCTCTTGTGTAAAACTCAACATGGCATGTACACATAGTCCGCACTAAAAAGGCCACAGAAAACAGGCCTGAAAAGGTCCAGTGAGACGTGGCTCAGTCTAGTGAAATTATATCTGATATGCCGCTGTCAGCCCCTCCTCCAGCGCCCCCTCCCCCTGTGATGACCCGGGTCTCGTGGAGGGAGCTGGCGGCGTGGCTGCTGGTGTCGTAGTGGCTGCTGGAGGAGGACACCAGGGCTGAGCTGGTGCTGGCTGCGGCTGCACTCTGCATGCTGCTCGTCAGGTTGTCCAGAAACATCTGTGGCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79211 lncRNA upstream 192729 3606062 ~ 3606309 (+) True G58948
TU79205 lncRNA upstream 242859 3547808 ~ 3556179 (+) True G58944
TU79200 lncRNA upstream 275417 3522846 ~ 3523621 (+) True G58941
TU79146 lncRNA upstream 276282 3521131 ~ 3522756 (+) False LOC120560521
TU79156 lncRNA upstream 294289 3504451 ~ 3504749 (+) True G58900
XR_005639569.1 lncRNA downstream 34210 3837307 ~ 3837679 (+) True LOC120561177
TU79324 lncRNA downstream 87948 3891045 ~ 3891853 (+) True G59033
TU79323 lncRNA downstream 92573 3895670 ~ 3896241 (+) True G59032
TU79333 lncRNA downstream 157963 3961060 ~ 3961319 (+) True G59042
TU79389 lncRNA downstream 329751 4132848 ~ 4133064 (+) True G59093
XM_039803625.1 mRNA upstream 23365 3688045 ~ 3775673 (+) False arid3c
XM_039803627.1 mRNA upstream 25520 3688045 ~ 3773518 (+) True arid3c
XM_039804121.1 mRNA upstream 123813 3630736 ~ 3675225 (+) True mamdc2a
XM_039803133.1 mRNA upstream 251705 3525307 ~ 3547333 (+) True fam189a2
XM_039803134.1 mRNA upstream 251705 3525307 ~ 3547333 (+) False fam189a2
XM_039804162.1 mRNA downstream 15225 3818322 ~ 3827427 (+) True LOC120561175
XM_039804168.1 mRNA downstream 45382 3848479 ~ 3868576 (+) False rad17
XM_039804172.1 mRNA downstream 45382 3848479 ~ 3868576 (+) False rad17
XM_039804174.1 mRNA downstream 45472 3848569 ~ 3865866 (+) False rad17
XM_039804167.1 mRNA downstream 45475 3848572 ~ 3868576 (+) True rad17
TU78941 other upstream 919294 2878401 ~ 2879744 (+) False lman2lb
TU78000 other upstream 3586668 210742 ~ 212370 (+) True LOC120560799
TU79382 other downstream 314182 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 621044 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 629074 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 629571 4432668 ~ 4432739 (+) True trnaq-uug_2
TU79509 other downstream 727013 4530110 ~ 4531165 (+) False mrpl41

Expression Profile