RNA id: TU79274



Basic Information


Item Value
RNA id TU79274
length 710
RNA type TUCP
GC content 0.66
exon number 1
gene id G58994
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3688629 ~ 3689338 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GGAAGTGTTCAGCTTACCTGTTTGAACTGCTCCTCATAGGTCCAGTCGTGGTGCTGGGGCTGCGGGGCCAAGGGAGACTCTGCGCGGCGGGCCGGGGCATAGGCTGCCGGGACTCTGGCCATGAGATGCATCGGGCCGCTCTTAGGAGGCAGACCGACTCCCTGGAGCGAGGATGCCCGGTGCTGGTAGTGGTTCAACCCGACATCATCttcgccctcctcctcctcctcttcatccatGATGTCCTGCTCCTCCATGTCGTCTCCCTCCTCTTCCCGGTCCTTACCGTCGCTGCCCGGTCTGGAGGAGGTCCCGTCCTCGGCGGCTCTGCGGACCTCCATGTGTGGGAGCGACGAGTTGGCAACTCCGGCGGCCAGAGCGCCTCGCATCGCCGCCTGGTAGTGTCGGAAAGCCAGCGCTTGTTGGTGGATCTGCGACTCCACCATGGAGCGGaggtctttctctgtctccGCCTGCCGGAGCTTCTCCTCCAGGGCCATGGAGCGGaggtctttctctgtctccGCCTGCCGGAGCTTCTCCTCCAGGGCCAGCCGCGCTGCCTGTTGCCGCTGCAGGTTCTCCATGACCGCTTCGAGCTTCATGCCGCCGCTGGCGGGCTGCTGGGACTGGACGCCGGGGAAGGGAGCCGGGATGGGAATGCTACTGGCGGGCGAGAAAGAGCCTTGCTgcggggggggtgggggtgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU79243 lncRNA downstream 82320 3606062 ~ 3606309 (-) True G58966
TU79202 lncRNA downstream 164044 3524383 ~ 3524585 (-) True G58943
TU79201 lncRNA downstream 165025 3522846 ~ 3523604 (-) True G58942
TU79199 lncRNA downstream 165873 3521187 ~ 3522756 (-) True G58940
TU79198 lncRNA downstream 174488 3513631 ~ 3514141 (-) True G58939
TU79279 lncRNA upstream 46216 3735554 ~ 3735874 (-) True G58996
TU79281 lncRNA upstream 48204 3737542 ~ 3737785 (-) True G58998
TU79283 lncRNA upstream 76853 3766191 ~ 3766435 (-) True G59000
XR_005639596.1 lncRNA upstream 101082 3790420 ~ 3792518 (-) True LOC120561443
TU79286 lncRNA upstream 101086 3790424 ~ 3792514 (-) False LOC120561443
XM_039803137.1 mRNA downstream 67149 3606395 ~ 3621480 (-) False ptar1
XM_039803139.1 mRNA downstream 67185 3606395 ~ 3621444 (-) True ptar1
XM_039803135.1 mRNA downstream 85471 3555073 ~ 3603158 (-) False apba1a
XM_039803136.1 mRNA downstream 98776 3555073 ~ 3589853 (-) True apba1a
XM_039804424.1 mRNA downstream 333682 3315816 ~ 3354947 (-) False LOC120561346
XM_039804159.1 mRNA upstream 109694 3799032 ~ 3816820 (-) False pias2
XM_039804160.1 mRNA upstream 109694 3799032 ~ 3816807 (-) True pias2
XM_039804158.1 mRNA upstream 109694 3799032 ~ 3816802 (-) False pias2
XM_039804166.1 mRNA upstream 141008 3830346 ~ 3844040 (-) False ydjc
XM_039804164.1 mRNA upstream 141008 3830346 ~ 3843580 (-) False ydjc
TU79177 other downstream 271775 3415627 ~ 3416854 (-) True G58920
TU79176 other downstream 291133 3397169 ~ 3397496 (-) True G58919
TU78857 other downstream 996107 2690610 ~ 2692522 (-) False LOC120561394
TU78855 other downstream 999780 2686676 ~ 2688849 (-) False si:ch211-107p11.3
XR_005639531.1 other downstream 1095883 2577875 ~ 2592746 (-) False ggt1a
TU79517 other upstream 734852 4424190 ~ 4430041 (-) False sub1b
TU79519 other upstream 743506 4432844 ~ 4435068 (-) False LOC120560375
TU79521 other upstream 743506 4432844 ~ 4436316 (-) False LOC120560375
TU79518 other upstream 743787 4433125 ~ 4435068 (-) False LOC120560375
XR_005639605.1 other upstream 1776885 5466223 ~ 5466437 (-) True LOC120561493

Expression Profile