RNA id: TU79437


Basic Information

Item Value
RNA id TU79437
length 1991
lncRNA type sense_over
GC content 0.40
exon number 2
gene id golph3a
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 4209748 ~ 4224568 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aatatcctaGCTCCACACAACTGCCTGCTGGATTCGGATTGAAGATTTCCATGGTGCGAGGCAAAAGCGCCAACcgctgagccaccgtgctggcTTACATTCCATCCCTTCTGgcctaaataataattttttttgtacaaCAGGACAATAAGCCTGCACATGCATGGACACATACGTTCCCTGCAATATGGAGTGGGGATTATCACTTTACTTAGACCTCTACCACGTTGAATATTTTGGGTGAAAACCtttcaaatgaaaatccaaAAGATGGAGAACATCATTAGACAGACTTGTTTAGTGCATTGGGTAAAATAGTGCTGGAATAATATAAATCCTATCACTAATGTAGAATGGATGGGGCTGATAGAAGTACAGTGTGTGGTGATAGGTGATGCTCTTTAACATATCCCCTGGCCCGTAGTGTTTTATTCGCAGTGAAACATGATTTTTGGTTTGTATCTCATCTAGATGCATTGTCAAAATGTGTGCATGTTGAATATAACCCAGGTTACATTCAGAATTCCAGTATGTAATATCTGAATGGTAACGGTCGAAAGCAAACGCATCTAGGTGCAAAATCATCTCcttgattaaaaacaaatggctcTAAAAATGTGTAATTGATAGGATTTGGTAGCGTCGTCTAACACAGCGGGGTAAGAAACCTTTTTGCGGTAGTGGCTGTTGAGGATCAAATTGAAATATTGTAGTGGCAGAACCAAACTCAGGAAAGCAGACCCAATCAATGCCAGCTGCCTTTTGTTAGCAAAATTCAAATAGACATAATTTTCACTTATTAGTGAATGCCAATATAATAATCACAAATGAAATAATCCATGGGTCTTTAATGCAGAAAAAATGCATTTCTGATCTTCTCCTCAGcttttgggtttgtgtgtgctACCCAAACTTGATTTCAGAAACAAAACTCCTTCAAGCCATTCACTTGAGACATTTTGTGAAAACTACGCTCATGAATGTGAATTTCAACTTTTCTCCAGGACATGGATTGGTCTAGGATGTGtacatgatcacacacacagagttttggGAGCTATTGTAGATGTTAGAGCTCGGTCTACTGCAGACAACAAATCCAATCTTTGAGTCAAGTAGTGGACCAGCCAGCACACAATATATCCTATGGAAATCAGACAGCTTTAGAGTTGTTGGAAGGTGTAATTTTGACTTAATGGAGCTATgctagcagtttccccctgCCTCCGGACTTGAAGCTTGACATAACATGTTCCAGACCTATCGTTGTCTTGGATGCAAAGAGCTGAAATGGATGTTGATCTTCTCATGTGAGTGTGGGCTTGTGGCAAACAAGTGCATTTCCTAAACTCGTCAGCGATGCTTAAATGTGCAGACAGTTTGCTTTACGTTGCAGCAACTTGTAAAATAAATCCATTGTACTCCCTTAACTTTGAAAACAATCTGATGGATTCTCTAACAACTTTTAAGACCAAAGTCTAATCCGAATAATCAAAAGATGGGCTCACATTCCAGATGTTGTGTGTAATTGTATTTGTATCAGGCACAAATTTCAAAGGACATCTTGTCACAGTATCTTTAATGGTTCATGCTGGTCGTGCTCTAAAACATTCATCAAAGCCTTTTTCACCGTGAACCATACCTTGCTCTTAATTTCATATTGCctcaattttatatattttgttttcacacttGTTTAGCTGTTCTGTGCTTTAACACAACTTTTGCTACGGCGCCTCATGGATCTCATGAAAGACATTGCTTTATGACGGACAGCCTCCCTCTGGTATCGTATGTAGCAAAGGGCGGGGGAGTGATCAGTCAGTGGATCCTTGCAGAAGAAAAAGAACTGACCAAGAGGTTTATGCATCAGAAAACCCCTCAAACTGCAGAGTGAATATAATAGATTATATATGTTATCTAAATAAAGGGACCTGTAGTCTGTGTACTTTCTTTCACCCTAGAAAATAAACCAAGAGCTTGGAAGTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79397 lncRNA downstream 22284 4187261 ~ 4187472 (-) True G59101
TU79394 lncRNA downstream 25839 4183353 ~ 4183917 (-) True G59098
TU79367 lncRNA downstream 106842 4099798 ~ 4102914 (-) True LOC120560054
XR_005639411.1 lncRNA downstream 106844 4099977 ~ 4102912 (-) False LOC120560054
XR_005639427.1 lncRNA downstream 216812 3985628 ~ 3992944 (-) True LOC120560115
TU79515 lncRNA upstream 201922 4413759 ~ 4413981 (-) True G59197
TU79528 lncRNA upstream 242853 4454690 ~ 4461071 (-) True G59207
XR_005639407.1 lncRNA upstream 336888 4548725 ~ 4557613 (-) True LOC120560046
TU79595 lncRNA upstream 413201 4625038 ~ 4625307 (-) True G59241
TU79627 lncRNA upstream 424071 4635908 ~ 4704273 (-) True G59268
XM_039802069.1 mRNA downstream 100533 4103017 ~ 4109223 (-) True isl1a
XM_039802070.1 mRNA downstream 100534 4103017 ~ 4109222 (-) False isl1a
XM_039804175.1 mRNA downstream 361246 3844642 ~ 3848510 (-) True ak6
XM_039804164.1 mRNA downstream 366176 3830346 ~ 3843580 (-) False ydjc
XM_039802792.1 mRNA upstream 212312 4424149 ~ 4430090 (-) False sub1b
XM_039802793.1 mRNA upstream 212312 4424149 ~ 4429863 (-) True sub1b
XM_039802794.1 mRNA upstream 221261 4433098 ~ 4435063 (-) True LOC120560375
XM_039802390.1 mRNA upstream 249592 4461429 ~ 4471480 (-) True LOC120560167
XM_039802392.1 mRNA upstream 265438 4477275 ~ 4529746 (-) True pnpla7b
TU79274 other downstream 520418 3688629 ~ 3689338 (-) True G58994
TU79177 other downstream 792902 3415627 ~ 3416854 (-) True G58920
TU79176 other downstream 812260 3397169 ~ 3397496 (-) True G58919
TU78857 other downstream 1517234 2690610 ~ 2692522 (-) False LOC120561394
TU78855 other downstream 1520907 2686676 ~ 2688849 (-) False si:ch211-107p11.3
TU79517 other upstream 212353 4424190 ~ 4430041 (-) False sub1b
TU79519 other upstream 221007 4432844 ~ 4435068 (-) False LOC120560375
TU79521 other upstream 221007 4432844 ~ 4436316 (-) False LOC120560375
TU79518 other upstream 221288 4433125 ~ 4435068 (-) False LOC120560375
XR_005639605.1 other upstream 1254386 5466223 ~ 5466437 (-) True LOC120561493

Expression Profile