RNA id: TU79470


Basic Information

Item Value
RNA id TU79470
length 296
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G59163
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 4349566 ~ 4349919 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagaagcagagtatgagggcgtgccctgccagtacctaggtaaggactactagccagtcagaagcagagtatgagggcgtgccctgacagtacctaggtaaggactactagccagtcagaagcagagtatgagggcgtgccctgacagtatctaggtaaggactactagccagtcagaagcagagtatgagggcgtgccctgacagtacctaggtaaggactactagccagtcagaagcagagtatgagggcgtgtcatgctagcagctaggtgagcattataacgtgtgttccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79435 lncRNA upstream 20106 4307919 ~ 4329460 (+) True G59132
TU79389 lncRNA upstream 216502 4132848 ~ 4133064 (+) True G59093
TU79333 lncRNA upstream 388247 3961060 ~ 3961319 (+) True G59042
TU79323 lncRNA upstream 453325 3895670 ~ 3896241 (+) True G59032
TU79324 lncRNA upstream 457713 3891045 ~ 3891853 (+) True G59033
TU79489 lncRNA downstream 83174 4433093 ~ 4435260 (+) True G59174
TU79492 lncRNA downstream 111445 4461364 ~ 4462824 (+) True G59175
TU79554 lncRNA downstream 204102 4554021 ~ 4555654 (+) True G59217
TU79552 lncRNA downstream 204623 4554542 ~ 4555451 (+) False G59217
TU79556 lncRNA downstream 207086 4557005 ~ 4558065 (+) True G59218
XM_039803329.1 mRNA upstream 5896 4271504 ~ 4343670 (+) True pdzd2
XM_039803330.1 mRNA upstream 5896 4271504 ~ 4343670 (+) False pdzd2
XM_039803331.1 mRNA upstream 5896 4271504 ~ 4343670 (+) False pdzd2
XM_039803676.1 mRNA upstream 122534 4226036 ~ 4227032 (+) True LOC120560812
XM_039804152.1 mRNA upstream 141067 4199523 ~ 4208499 (+) True si:dkey-3h3.3
XM_039802033.1 mRNA downstream 7175 4357094 ~ 4388795 (+) True npr3
XM_039802795.1 mRNA downstream 87614 4437533 ~ 4456244 (+) True araf
XM_039802391.1 mRNA downstream 180135 4530054 ~ 4531159 (+) True mrpl41
XM_039803219.1 mRNA downstream 221464 4571383 ~ 4617968 (+) True LOC120560573
XM_039803221.1 mRNA downstream 221464 4571383 ~ 4617968 (+) False LOC120560573
TU79382 other upstream 231935 4117279 ~ 4117631 (+) True G59086
TU78941 other upstream 1469822 2878401 ~ 2879744 (+) False lman2lb
TU78000 other upstream 4137196 210742 ~ 212370 (+) True LOC120560799
TU79482 other downstream 74222 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 82252 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 82749 4432668 ~ 4432739 (+) True trnaq-uug_2
TU79509 other downstream 180191 4530110 ~ 4531165 (+) False mrpl41
TU79671 other downstream 703347 5053266 ~ 5351131 (+) False fbrsl1

Expression Profile