RNA id: TU79492


Basic Information

Item Value
RNA id TU79492
length 1414
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G59175
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 4461364 ~ 4462824 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atatatatatatatatatatatatatatatattttttttttttttttaataatctggTCAAATGGTTTTCATACACatccaatttatttttttagtataTACGTCAATGTCTCCATGAACATACATTGTGGCATATTTTCGGTCCAAGCACAGATTGTAGGTGCCTCCATGTTCTTCCAGATGAGAGCTATAGTCCTTTTTGCCTGTAGTATATacaacatgaatacatttatatGTTTGGGGTTTCAAATTTAGATTTGTTGGATACAGGTGCAGAAAAATCATCTTaggattccagcttgttaaatgtgaatatattctagtttcttctctcctctgggacagtagaCTGAATatcaaacaagacatttgaggacgtcatcttgggctttttgggaaataaTTGTTCCTTTAAAATTGGAAGTCTTCAACATTTATATAGAAGGGTTTTTTCCCTGccttttaatttataaaatttAGAGAAACAAGTGTCAGCTGTCAGTTTCTAGAGGAACCAACTGATGGTTGAACAGGGTCAAAAGAGGAAGTGGTTACAGGTTTGGCTTCACCACAGATCAGAGCACTGCAAGCTAGCAACAGGAAATGCTGATCATCTTAACATGAGCTTAGTCAAAATGGAGGATACAGTTCTTAATACTGTAAACAATACTTATTGGTGTATCAGGACTTCCCAAAAGTTAagtttgtggggaaaaaaaatatactgtagatatgtAATATTGTACATGAAAATAGATTTTCATATTTATTCCCTTCAAAAGATGTACAATGTAGAAAAGTTGAGTGGAACCCGGAAACAAGCGGCTTTTATGCCACACAGCTCGGACTGAAATAGCATTCGACATAGTTTGTTTTCGCTCACAATTATAGAAGGCCATGTCTgaaacatttttgtgtgtgtgcgattTAGACTTCAACCAATCTTTTGATCTTAAATGTTTTTCCAGAAACATCCTTTTCATTCCATTCTTGCCTTCTAAAAACTGAAAACTGTACAGCAAATCAACTGTGAAATACGTAGATAAAAAGACATTGTTTGACATATAGTACTGTCTACAACTTGTAGCCCAGGCCAGATCTGCTGATGTGGCAGAAGAGCGTCATGGCGAAACACATTCCCAAGACCTGTcaacaaaagagcaaaaaatGTAACCAGAAACACAACAGATTATGTTGTTGCCTGGTGTTTGGCACAGAAAAGAGCATTTATACATCTTCATAGCTGTTATTATATGTAAAAACCTCAAAACCAGGGGGGGTGGTTAGTGCGTTAgtaccattactgatggctgcattccacttaggagaggtcctggtattaaaccattactgatggctgcattccacttacagtgccttgcgaaagtattcggcccccttgaacgtgtcgacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79489 lncRNA upstream 26104 4433093 ~ 4435260 (+) True G59174
TU79470 lncRNA upstream 111445 4349566 ~ 4349919 (+) True G59163
TU79435 lncRNA upstream 131904 4307919 ~ 4329460 (+) True G59132
TU79389 lncRNA upstream 328300 4132848 ~ 4133064 (+) True G59093
TU79333 lncRNA upstream 500045 3961060 ~ 3961319 (+) True G59042
TU79554 lncRNA downstream 91197 4554021 ~ 4555654 (+) True G59217
TU79552 lncRNA downstream 91718 4554542 ~ 4555451 (+) False G59217
TU79556 lncRNA downstream 94181 4557005 ~ 4558065 (+) True G59218
TU79568 lncRNA downstream 109328 4572152 ~ 4618033 (+) False LOC120560573
TU79594 lncRNA downstream 160691 4623515 ~ 4624154 (+) True G59240
XM_039802795.1 mRNA upstream 5120 4437533 ~ 4456244 (+) True araf
XM_039802033.1 mRNA upstream 72569 4357094 ~ 4388795 (+) True npr3
XM_039803329.1 mRNA upstream 117694 4271504 ~ 4343670 (+) True pdzd2
XM_039803330.1 mRNA upstream 117694 4271504 ~ 4343670 (+) False pdzd2
XM_039803331.1 mRNA upstream 117694 4271504 ~ 4343670 (+) False pdzd2
XM_039802391.1 mRNA downstream 67230 4530054 ~ 4531159 (+) True mrpl41
XM_039803219.1 mRNA downstream 108559 4571383 ~ 4617968 (+) True LOC120560573
XM_039803221.1 mRNA downstream 108559 4571383 ~ 4617968 (+) False LOC120560573
XM_039803222.1 mRNA downstream 108560 4571384 ~ 4617968 (+) False LOC120560573
XM_039803220.1 mRNA downstream 108560 4571384 ~ 4617968 (+) False LOC120560573
unassigned_transcript_242 other upstream 28625 4432668 ~ 4432739 (+) True trnaq-uug_2
unassigned_transcript_241 other upstream 29111 4432171 ~ 4432253 (+) True trnal-aag_1
TU79482 other upstream 31383 4424141 ~ 4429981 (+) True G59172
TU79382 other upstream 343733 4117279 ~ 4117631 (+) True G59086
TU78941 other upstream 1581620 2878401 ~ 2879744 (+) False lman2lb
TU79509 other downstream 67286 4530110 ~ 4531165 (+) False mrpl41
TU79671 other downstream 590442 5053266 ~ 5351131 (+) False fbrsl1
TU79728 other downstream 985312 5448136 ~ 5453494 (+) False golga3
TU79729 other downstream 985312 5448136 ~ 5453494 (+) False golga3
TU79733 other downstream 1032331 5495155 ~ 5497754 (+) True G59347

Expression Profile