RNA id: XM_039802792.1


Basic Information

Item Value
RNA id XM_039802792.1
length 2133
RNA type mRNA
GC content 0.40
exon number 5
gene id sub1b
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 4424149 ~ 4430090 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGAACAGCCATCGAGACAACACCGGGACGTTACGTTACTTGCGAAGGAGACGTTTGAATTTTAGGCAGGCAGCCACTAGCCTACTACTTCCTCGCACCGGAAAATCAGTTAGCTTTCCGCTTCCCGTCAAGAGATCCGCCAAACTCCATCCCATCATCAAAATGCCCAAATCAAAGGAAGTGCTGTCCTCCACATCTGGAAGTGACTCTGACAGTGAAGTAGAGACCAAGgcaaAGAGAAAGAAGTCAAATCCACCAGAGAAACCAGCCAAGAAACCAAAGAGCGGCGAGAGTTCCAAGCCAGGCGGCTCATCCAAGGGCAGCGGCAATGGCGATGACAACATGTTCCAGATTGGAAAGATGAGGTATGTCAGCGTCAGGGACTTCAAAGGCAAAGTCCTGATTGACATCAGAGAGTACTGGATGAACCAAGATGGGGAGATGAAGCCGGGGAAAAAAGGTATCTCCCTGAATCCCGAACAGTGGAACCAACTGAAGGACCAGATTTCAGAAATTGATGATGCCATGAAGAGAATATAAGCATTCCTTTCGATGTGATCTGTTGAACTTATTCCTTTTAAGTTAGTTGGCTGATCAGTTTTGTAAAAATCCTGGATTTGTTTTCTAATGGACTTGTTTAGTTTGTAGTTGTATAGACCTAGAGTCGTCTGCGTACTCTGGTTTTCGGTGTGAAACTTGTTTTTGAGCTGGTTAAGGAAAGGGATGGGTGGATGAGTAGGGGGTGGGTAGAGCGTATCAATACCGTGatgttttttattgaataataaaaatgagGCACTAGCTTAATATTGTTGTTCACTGTGTAAGTCCATTGTCACACTATCTTGAATTTTAGGACTCTGTTTGATCTGACCTTTGTAATACCCAACATCAGTGCTCTTCATTTCAGAAAGCCGATCCAGTCTGTCATGTTGTACCTGCAGGGGGTTAGAGCCATGGTGACCCATGGGTTAGGTTTTGAAATTAAATGATACTATCAAACAAATTGTCAAATGATATTATTGAAAGCATTGTATTAGACTTGCATTACCTGCAACTAAGACTGGGCAATAATTCAATATGATAATTTAACCGTCTTTCAATGGAATCATATTGCGATGAAATCATATATCAAGATATTGTGATATACAATGCGTCTAAATTGATAATAAGCCCATTCTGATTCAGTTTTCTCAGAAAATCTGTTGTGAAACATTTTGGGGGATTATTTGAAgaattgcagatttgttttaacaTGGCATTATtgttgtgcatgcatgtaaacaGTCAGTATAtagctggaaaaaaaagttttctctATAATTTCACTTGAAACTGTTTACCatattgatgattatttgtctaaaatctcattgtaaaaaatattttgtgaaagcaccaattgtcaaccctataatatcatcgatgtatttggtcaaaaatatcatatcatctgattttctccatatcgcccagccctaccacaCTTGTCATAAAGAACAGGAGGCTTGTGTGTCCTTGGTGTGTAAGGCCAAAAGTTCtaggcctatatacagtatggtgtttctcaaactttatCAGACCAAGGACCACTTACCCGATAAAAAAACCAACTCACGGACCACAGAACTGCCAAATTATCCCCCAAAACAATAGACCAGCCAAATAAAATGACACTTCTACAAATAGCTTACTCACTTATTGTCTCTGTTGCCAAGAATGGTGCTGCTGAGGCATCAGGCAAGCAATGTCTGTCAGAAGCCATTGATCCATCTTGTCAGTTGACAATAACAGTAAACTTcatatatccatatatatatcCTTTGAATGTCACGCTGAGGATCATTTGTGACATAAATTGGAGGAGTTGTTGCAAAACGGACGGCATTATTGTTGAAGTTAAACGACACAGCAGAACAGCCAATTTAAATAATTCGTTTGCATTCACACAATATTGAAAACAGCACATCTATGCACCTCACTAGGCTTTGGAGTTGCTGGCAGACAGTTTGAGAAAcagaattttaaataaaaacattattttaccaAATCTACTCATGGACCACCAGGGGTCACTCACTTAATACTCACCATAATAAACACTCATAGGCCAGGCCTATGCATAAGTCtgaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79515 lncRNA downstream 10168 4413759 ~ 4413981 (-) True G59197
TU79437 lncRNA downstream 212312 4209756 ~ 4211837 (-) False golph3a
TU79397 lncRNA downstream 236677 4187261 ~ 4187472 (-) True G59101
TU79394 lncRNA downstream 240232 4183353 ~ 4183917 (-) True G59098
TU79367 lncRNA downstream 321235 4099798 ~ 4102914 (-) True LOC120560054
TU79528 lncRNA upstream 24600 4454690 ~ 4461071 (-) True G59207
XR_005639407.1 lncRNA upstream 118635 4548725 ~ 4557613 (-) True LOC120560046
TU79595 lncRNA upstream 194948 4625038 ~ 4625307 (-) True G59241
TU79627 lncRNA upstream 205818 4635908 ~ 4704273 (-) True G59268
TU79649 lncRNA upstream 302540 4732630 ~ 4842143 (-) True G59287
XM_039803675.1 mRNA downstream 199581 4209748 ~ 4224568 (-) True golph3a
XM_039802069.1 mRNA downstream 314926 4103017 ~ 4109223 (-) True isl1a
XM_039802070.1 mRNA downstream 314927 4103017 ~ 4109222 (-) False isl1a
XM_039804175.1 mRNA downstream 575639 3844642 ~ 3848510 (-) True ak6
XM_039804164.1 mRNA downstream 580569 3830346 ~ 3843580 (-) False ydjc
XM_039802794.1 mRNA upstream 3008 4433098 ~ 4435063 (-) True LOC120560375
XM_039802390.1 mRNA upstream 31339 4461429 ~ 4471480 (-) True LOC120560167
XM_039802392.1 mRNA upstream 47185 4477275 ~ 4529746 (-) True pnpla7b
XM_039802398.1 mRNA upstream 101878 4531968 ~ 4543886 (-) False dph7
XM_039802397.1 mRNA upstream 101878 4531968 ~ 4543859 (-) False dph7
TU79274 other downstream 734811 3688629 ~ 3689338 (-) True G58994
TU79177 other downstream 1007295 3415627 ~ 3416854 (-) True G58920
TU79176 other downstream 1026653 3397169 ~ 3397496 (-) True G58919
TU78857 other downstream 1731627 2690610 ~ 2692522 (-) False LOC120561394
TU78855 other downstream 1735300 2686676 ~ 2688849 (-) False si:ch211-107p11.3
TU79519 other upstream 2754 4432844 ~ 4435068 (-) False LOC120560375
TU79521 other upstream 2754 4432844 ~ 4436316 (-) False LOC120560375
TU79518 other upstream 3035 4433125 ~ 4435068 (-) False LOC120560375
XR_005639605.1 other upstream 1036133 5466223 ~ 5466437 (-) True LOC120561493
XR_005639606.1 other upstream 1161492 5591582 ~ 5591708 (-) False LOC120561494

Expression Profile