RNA id: TU79519


Basic Information

Item Value
RNA id TU79519
length 522
RNA type TUCP
GC content 0.51
exon number 3
gene id LOC120560375
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 4432844 ~ 4436316 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGGCCGCTTTAAATGGAAGAAGAAGACATATATCCCAGCGTGCACTACTGCTGTTGTGTCCGATGTTACCAAACCAAACTAAGCAGACTATGATTCTGTAAGTGATTTTTTTGGGCAGTGAATCAGACACAGATATCAGGCAGATACTGTGTTCCCTTTAGCCTCTTCCAGGATGAGCGGCATGCGCACCTTCCTGAGCGCCAGCGGGATGGTGGCGGTGGTGGGGCTCGGCTTTGGGATGTGGTCTATCATGTCTCCGGGAGAAGAGCAACGGAGAGAGCTCATCAAGAATCTGCCTGAATCGAACCCAAAGAGAATGGAAGAGACGAGGAAGAGGAACGCTCTGGTGATGCAGGCACTCAAGGAAGCGGCTGAAACCGACGAGAATATTGCAAGAGGACCTGCGAGATAGACAGGCCCAGCTCTGTGACCTGTTTGGGAAGTCTCCGTGTATTGAATGCTGCAGGGCCACAACCTGTTTAAATAAAGTCTCACTGGTACCCGAAACGACATGAGCCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79515 lncRNA downstream 18863 4413759 ~ 4413981 (-) True G59197
TU79437 lncRNA downstream 221007 4209756 ~ 4211837 (-) False golph3a
TU79397 lncRNA downstream 245372 4187261 ~ 4187472 (-) True G59101
TU79394 lncRNA downstream 248927 4183353 ~ 4183917 (-) True G59098
XR_005639411.1 lncRNA downstream 329932 4099977 ~ 4102912 (-) False LOC120560054
TU79528 lncRNA upstream 19622 4454690 ~ 4461071 (-) True G59207
XR_005639407.1 lncRNA upstream 113657 4548725 ~ 4557613 (-) True LOC120560046
TU79595 lncRNA upstream 189970 4625038 ~ 4625307 (-) True G59241
TU79627 lncRNA upstream 200840 4635908 ~ 4704273 (-) True G59268
TU79649 lncRNA upstream 297562 4732630 ~ 4842143 (-) True G59287
XM_039802792.1 mRNA downstream 2754 4424149 ~ 4430090 (-) False sub1b
XM_039802793.1 mRNA downstream 2981 4424149 ~ 4429863 (-) True sub1b
XM_039803675.1 mRNA downstream 208276 4209748 ~ 4224568 (-) True golph3a
XM_039802069.1 mRNA downstream 323621 4103017 ~ 4109223 (-) True isl1a
XM_039802070.1 mRNA downstream 323622 4103017 ~ 4109222 (-) False isl1a
XM_039802390.1 mRNA upstream 26361 4461429 ~ 4471480 (-) True LOC120560167
XM_039802392.1 mRNA upstream 42207 4477275 ~ 4529746 (-) True pnpla7b
XM_039802398.1 mRNA upstream 96900 4531968 ~ 4543886 (-) False dph7
XM_039802397.1 mRNA upstream 96900 4531968 ~ 4543859 (-) False dph7
XM_039802393.1 mRNA upstream 96900 4531968 ~ 4543859 (-) False dph7
TU79517 other downstream 2803 4424190 ~ 4430041 (-) False sub1b
TU79274 other downstream 743506 3688629 ~ 3689338 (-) True G58994
TU79177 other downstream 1015990 3415627 ~ 3416854 (-) True G58920
TU79176 other downstream 1035348 3397169 ~ 3397496 (-) True G58919
TU78857 other downstream 1740322 2690610 ~ 2692522 (-) False LOC120561394
XR_005639605.1 other upstream 1031155 5466223 ~ 5466437 (-) True LOC120561493
XR_005639606.1 other upstream 1156514 5591582 ~ 5591708 (-) False LOC120561494
TU79960 other upstream 1991138 6426206 ~ 6426786 (-) False G59521
TU79962 other upstream 1991138 6426206 ~ 6426811 (-) True G59521
TU79959 other upstream 1991182 6426250 ~ 6426786 (-) False G59521

Expression Profile