RNA id: TU79556


Basic Information

Item Value
RNA id TU79556
length 1025
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G59218
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 4557005 ~ 4558065 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctttaatatttgtttaatgttgatttttttgtttcttgctTTTgttccatcatcatcatcatctgcttCAGATATCTTCTTGAAGATTTTccagatgtttattttgtccCATATTCACTGAGCTCCCAAAAGGGACCTTATTTATATTTAGTGTCccaaaaacagaatacaattcCCAGTTGTTGGTATAGTTACTTCAAAAAAGTTAGTTAACTTTTACCTTAGAAACTgaatttttgtcacatttctttGAGTACAACACTGGTCTGGTCTATAGATCAGTCGCCCTGACTGGGTGGATGATACAGAACCTGGACGTCTTTGATGATGTCAGGACTAATTacctcttcatcttcttctccaGCCTTCTTCTTCATACATAATTTTCTATCCATGATAAAGCAGATGCAGCTTCTCTccaaaatggaggaaaaacattactttttagGAGTAGGTGGTAAAGAATCTTATTTTATTGAAGCTGCGAGTGTGGGCTGGCAGTGGGGGTGgtgggtctgaagatggctggactgacagtgggggtgctgggtccgaagatggctggactgacAGTGGGGGTGgtgggtccgaagatggctggactggcagtgggggtgctgggtccgaagatggctggactgacAGTGGGGGTGgtgggtccgaagatggctggactggcagaggGGGGGTGcgtccgaagatggctggactggcagaggGGTGTTgtggtctgaagatggctggactgacagtgggggtgctgggtctgaagatggctggactggcagagGGGGGTGCTGGGCTGTGTTCCTCAGTGGGGCTGCAGACTTGCTGTTCCAGTGCGTGGCGTGGCTATTGGCAGCAGAGGACTCTGAAGGGGGGTTATTCCTGAGAACGGAGATCTTCCAGTTAGTAGCGTCAGGGAGCGGAGCAGACAGGGAAGTACAACAACAAGAAACTAGACTAGATCCAAATCTCGAAGGctggtgtcagtacccgatccgttccacctgcacaatccgttc

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79554 lncRNA upstream 1351 4554021 ~ 4555654 (+) True G59217
TU79552 lncRNA upstream 1554 4554542 ~ 4555451 (+) False G59217
TU79492 lncRNA upstream 94181 4461364 ~ 4462824 (+) True G59175
TU79489 lncRNA upstream 121745 4433093 ~ 4435260 (+) True G59174
TU79470 lncRNA upstream 207086 4349566 ~ 4349919 (+) True G59163
TU79568 lncRNA downstream 14087 4572152 ~ 4618033 (+) False LOC120560573
TU79594 lncRNA downstream 65450 4623515 ~ 4624154 (+) True G59240
TU79601 lncRNA downstream 86567 4644632 ~ 4668855 (+) True G59247
XR_005639477.1 lncRNA downstream 340793 4898858 ~ 5053215 (+) True LOC120560386
XR_005639476.1 lncRNA downstream 340793 4898858 ~ 5053215 (+) False LOC120560386
XM_039802391.1 mRNA upstream 25846 4530054 ~ 4531159 (+) True mrpl41
XM_039802795.1 mRNA upstream 100761 4437533 ~ 4456244 (+) True araf
XM_039802033.1 mRNA upstream 168210 4357094 ~ 4388795 (+) True npr3
XM_039803330.1 mRNA upstream 213335 4271504 ~ 4343670 (+) False pdzd2
XM_039803219.1 mRNA downstream 13318 4571383 ~ 4617968 (+) True LOC120560573
XM_039803221.1 mRNA downstream 13318 4571383 ~ 4617968 (+) False LOC120560573
XM_039803222.1 mRNA downstream 13319 4571384 ~ 4617968 (+) False LOC120560573
XM_039803220.1 mRNA downstream 13319 4571384 ~ 4617968 (+) False LOC120560573
XM_039803224.1 mRNA downstream 13319 4571384 ~ 4617968 (+) False LOC120560573
TU79509 other upstream 25840 4530110 ~ 4531165 (+) False mrpl41
unassigned_transcript_242 other upstream 124266 4432668 ~ 4432739 (+) True trnaq-uug_2
unassigned_transcript_241 other upstream 124752 4432171 ~ 4432253 (+) True trnal-aag_1
TU79482 other upstream 127024 4424141 ~ 4429981 (+) True G59172
TU79382 other upstream 439374 4117279 ~ 4117631 (+) True G59086
TU79671 other downstream 495201 5053266 ~ 5351131 (+) False fbrsl1
TU79728 other downstream 890071 5448136 ~ 5453494 (+) False golga3
TU79729 other downstream 890071 5448136 ~ 5453494 (+) False golga3
TU79733 other downstream 937090 5495155 ~ 5497754 (+) True G59347
TU79987 other downstream 2116852 6674917 ~ 6677484 (+) False kat6a

Expression Profile