RNA id: XM_039803223.1


Basic Information

Item Value
RNA id XM_039803223.1
length 3279
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC120560573
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 4571383 ~ 4618033 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGACTGTTGCCCTGTGCGGCTGTGCCATAACATAACATCCAGCCGCTGGTGTCGAGTAGTCTACTCATCCTAGCTTCGAGTGTATACACCACAAGCTAGCAGTAACAGACACAATAATGGATTTCAACGTGAAGAAATTTGCGAGCGACGCAGGATTGTTTTTCACGCGAGCTGTCCAGTTCACAGAGGAGAAGTTGGGCCAGGCAGAGAAGACTGAGTTGGACGCTCACTTCGAGAACCTGATGAGCCGTGCAGACTGCACCAAACACTGGACTGAGAAAATATATAGACAGACTGAGGTCCTGCTGCAGCCCAACCCAAGTGCCAGAATTGAGGAGTTTCTCTATGAAAAGTTGGACAGGAAGGCACCATGCAGAATTACCAATGGAGAGCTGCTGGGTCAATATATGCAGGATGCAGCAAAGGAATTTGGCCCTGGAACTCCTTATGGGAGTACCTTGATGGAGGTTGGGGATTGTGAGAGAAGATTAGGAGCAGCAGAGCGGGAGTTCTTCCAGACTTCAGCCATCAGCTTTCTTACCCCCCTCAGGAACTTTCTGGAAGGAGACTGGAGAACCATTTCAAAAGAACGGCGTCTTCTGGAGAATCTTCGCCTGGACCTGGATGCCTGTAAAACCCGTGTGAAGAAGGCCAAGGTGGCTGAGACTAAGGCTGCGATGGCTCCAGATTTTCAGGAGACCAGACCCCGCAACTATGTGCTTTCTGCCAGTGCCTCTGCGCTCTGGAGTGAGGAAGTGGAAAAAGCTGAACACGAGCTCCGAGTGGCCCAAACAGAGTTTGACCGCCAAGCAGAGGTTACACGGCTGCTTTTGGAGGGCATCAGTAGTACGCATGTGAACCACTTGCGCTGCCTGCATGAGTTTGTGGAGGCCCAGGCAACTTACTATAAGCAGTGTCATTTCCACATGCAAGAACTCCAGAAAGAGCTGGCCAGTTGTGATCAGGACGTGCTTCCCAATGCATTTGCGCTGAACTCCACTCACTCCATAGCTACTGCGGGCTCTGCATCAGAGGGCAtcagcagcgctgtggagacagACACACTGAAGATTGAGGAAGTTCAGGCACCAGCGACAGGAACCCGCAAGGCCAAAGTCCTTTATGATTACGATGCTGCTGACTCCAGTGAGCTCTCCCTTTTAGCTGATGAGCTCATTACAGTTTACACAGTGCCTGGAATGGACTCTGACTGGCTGATTGGAGAGAGAGGAAACCAGAAAGGAAAAGTGCCTGTCACATACCTGGAGCTTCTCAGCTAAAGAACACACAcgcattgacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtacgtgcatgtgcatgtgtgagtacTACTGAAGCCATGAGGATATTTCATTCACTTCATTAAATTTCACACTCTTACACTAACCTGTAACCTTCAATAGCACTCCTCCACAGTAAGCATTAGCaaagttaaacacacacacacacacacacactcattcgtGTGCctctcagaacacactgaaatATAATCACATGACACTGACCCAGTGATAATGGAGACATTGTTACAATGTGTGCAGGAAAAATCCCTGTGGGGAATAGTTAACATTCCTTTTAGGTATGTTTtggtggattattattattattattattattattattatgatgatgatgttttcttatttattacatatttattgTTGTACATCCCAATGGTTCAGGTAGACCTTTCTCACTGTCTTCAGATGGATTTCCATTGAAAtaatgttgatttgtttaaaaagaaaagtgtcTTTATTGTCTCTTGAAGCTGTCCATGGAGTTTGTCTTCAGAAGGCAGCGGTACGGATGAAACTGGCGTGCAATAACCACGCTTCCTAGATTCTCAAGGGGTGATGACAATTCTTATCCTTCAATTATGTCAGTTAGTACAGTTTATCTCTGTATGACAGCTACTTCTTGTCATTGAAGAAGTGAAAACAGACACGGGAAAAAGGATCATTATGACCACATCTTGACAGATATGTCATTATGTTCTGTTGCTGTTGCATAACTAAAAATAACGTACAACTGCTTCATAGTTTTGTTACAGAAATGTGTGCTCTGTTATTCCCCTTTCTTTCAAAACGACCTGTATAGATTTGCAtttcttgtgtttcttttttatcctcgatgaaaacattaaatatgaCTAACACTTGCTCAGTGAATAACAAAAACTATAAAACGGCAAATAAATTTTtacatggattttttttaatcattctaTTATCCTCAACTCTTTGGAAGCAGATTTGCCTTAACTGCTAAATAAAAAGAATGTAATTCCTGTTATTTAAAGTGACAATAACATTTTGTGAACAGTTGGCTGGAACATTACTAGCAACAGTTTAGCTCTATTAAGTCATGCCATTCACTTGTTTTGATTAGACTTTTTACCAAATGGGCTTTTTTTTGCCTTTCACGCCTTTCCACGGCCCTGAAGATGTCCCTTTTAAATATATGAACACCTGTGCAGcaaataaacatgaacacttgCGTCCTAACTGCCTTAAGATGATGGGTAGGAACTGCTAAGGCCATCTGCTGCAAACCAGAGACTGTGCTCTTCCTAACAAAATGTCCAGAGAGCTAATGTACACCACATACGGCATGCAAGACTGCAACTCCTTTTAAtcatgtgtgcgtgtttgtgtgattTTGGTTTGCCCTTAAGTGTTTTTTGAATTTGCGACTTTCCTGTTTGTTGCTGCTTTGTTAATACGTGAAAGTGTCTTCAGTCTTAGTGCTGCATGTGCTACAGCtagtagcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagtgtgagagagagtgtgagagaactGGATTACCAAAATGTTTTGCACGCTTGCAATATGTGCTCTCTCACATccagtatgtgtgcatgcagcGCTCTGCCTTTATTATTTTAACGACCCAGTTTTTGTGAAATGAGCACAATGTTTGAAAATCATTCTTGTTGGCAGACTAATGTAATCCATGGCATGTGTGCTGCTCCCTACTCTTGTGCTCATTTCACACATTTTGGAAGAATTCTTCTtttcagaaatgtttttttactgATTCTGTTGTGATTCTGTTTACCTCATCTTgtattataaatattattattattattatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79556 lncRNA upstream 13319 4557005 ~ 4558065 (+) True G59218
TU79554 lncRNA upstream 15730 4554021 ~ 4555654 (+) True G59217
TU79552 lncRNA upstream 15933 4554542 ~ 4555451 (+) False G59217
TU79492 lncRNA upstream 108560 4461364 ~ 4462824 (+) True G59175
TU79489 lncRNA upstream 136124 4433093 ~ 4435260 (+) True G59174
TU79594 lncRNA downstream 5547 4623515 ~ 4624154 (+) True G59240
TU79601 lncRNA downstream 26664 4644632 ~ 4668855 (+) True G59247
XR_005639477.1 lncRNA downstream 280890 4898858 ~ 5053215 (+) True LOC120560386
XR_005639476.1 lncRNA downstream 280890 4898858 ~ 5053215 (+) False LOC120560386
TU79672 lncRNA downstream 284015 4901983 ~ 4902190 (+) True G59296
XM_039802391.1 mRNA upstream 40225 4530054 ~ 4531159 (+) True mrpl41
XM_039802795.1 mRNA upstream 115140 4437533 ~ 4456244 (+) True araf
XM_039802033.1 mRNA upstream 182589 4357094 ~ 4388795 (+) True npr3
XM_039803330.1 mRNA upstream 227714 4271504 ~ 4343670 (+) False pdzd2
XM_039803163.1 mRNA downstream 78635 4696603 ~ 4703041 (+) True LOC120560544
XM_039803622.1 mRNA downstream 86749 4704717 ~ 4735322 (+) False golga1
XM_039803621.1 mRNA downstream 86749 4704717 ~ 4735322 (+) True golga1
XM_039803619.1 mRNA downstream 86749 4704717 ~ 4732698 (+) False golga1
XM_039803620.1 mRNA downstream 87928 4705896 ~ 4735322 (+) False golga1
TU79509 other upstream 40219 4530110 ~ 4531165 (+) False mrpl41
unassigned_transcript_242 other upstream 138645 4432668 ~ 4432739 (+) True trnaq-uug_2
unassigned_transcript_241 other upstream 139131 4432171 ~ 4432253 (+) True trnal-aag_1
TU79482 other upstream 141403 4424141 ~ 4429981 (+) True G59172
TU79382 other upstream 453753 4117279 ~ 4117631 (+) True G59086
TU79671 other downstream 435298 5053266 ~ 5351131 (+) False fbrsl1
TU79728 other downstream 830168 5448136 ~ 5453494 (+) False golga3
TU79729 other downstream 830168 5448136 ~ 5453494 (+) False golga3
TU79733 other downstream 877187 5495155 ~ 5497754 (+) True G59347
TU79987 other downstream 2056949 6674917 ~ 6677484 (+) False kat6a

Expression Profile