RNA id: TU79594


Basic Information

Item Value
RNA id TU79594
length 640
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G59240
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 4623515 ~ 4624154 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

Cggcacactacgcgagcttcgcctgcacggagaccagcggtgtcgctcaatgccgctagccggctaggggacatcctcatcggctaggtggaaagctaacgctagctgtccacctgtcccagccatcctgcttgcaagtgtctgctcattaaacaacaagctggactacatcctccttcaacgaaactcccaacgtgagttcagtgactgctgtgtttttgttgttgtggaaacatgcctgaacaacagtgtaccggcaccgggactatccagctaccaggctgctctcgccggcccgtggaggtgggctgtgttaaacggactggtgtagaaataaaatccaactagctactgctaactgctggtggagcttgtgactgttaaatgccgaccattcgacattccacgctaattcacgcctgtgtttatactccgtgtttagctacaccaatgctagtatgcgttagctgaactttacggatcctgcttgcaagtgtccgctcatttagaccacaaactggactacatccaacttcaacgaaactcccaacgtgagttgagagactgccgtgtttttgttgttgtggaaacctgcctgaatagtgtaccggactgtccagctaccaggcctgctagccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79568 lncRNA upstream 5482 4572152 ~ 4618033 (+) False LOC120560573
TU79556 lncRNA upstream 65450 4557005 ~ 4558065 (+) True G59218
TU79554 lncRNA upstream 67861 4554021 ~ 4555654 (+) True G59217
TU79552 lncRNA upstream 68064 4554542 ~ 4555451 (+) False G59217
TU79492 lncRNA upstream 160691 4461364 ~ 4462824 (+) True G59175
TU79601 lncRNA downstream 20478 4644632 ~ 4668855 (+) True G59247
XR_005639477.1 lncRNA downstream 274704 4898858 ~ 5053215 (+) True LOC120560386
XR_005639476.1 lncRNA downstream 274704 4898858 ~ 5053215 (+) False LOC120560386
TU79672 lncRNA downstream 277829 4901983 ~ 4902190 (+) True G59296
TU79673 lncRNA downstream 286916 4911070 ~ 4911289 (+) True G59297
XM_039803219.1 mRNA upstream 5547 4571383 ~ 4617968 (+) True LOC120560573
XM_039803221.1 mRNA upstream 5547 4571383 ~ 4617968 (+) False LOC120560573
XM_039803222.1 mRNA upstream 5547 4571384 ~ 4617968 (+) False LOC120560573
XM_039803220.1 mRNA upstream 5547 4571384 ~ 4617968 (+) False LOC120560573
XM_039803224.1 mRNA upstream 5547 4571384 ~ 4617968 (+) False LOC120560573
XM_039803163.1 mRNA downstream 72449 4696603 ~ 4703041 (+) True LOC120560544
XM_039803622.1 mRNA downstream 80563 4704717 ~ 4735322 (+) False golga1
XM_039803621.1 mRNA downstream 80563 4704717 ~ 4735322 (+) True golga1
XM_039803619.1 mRNA downstream 80563 4704717 ~ 4732698 (+) False golga1
XM_039803620.1 mRNA downstream 81742 4705896 ~ 4735322 (+) False golga1
TU79509 other upstream 92350 4530110 ~ 4531165 (+) False mrpl41
unassigned_transcript_242 other upstream 190776 4432668 ~ 4432739 (+) True trnaq-uug_2
unassigned_transcript_241 other upstream 191262 4432171 ~ 4432253 (+) True trnal-aag_1
TU79482 other upstream 193534 4424141 ~ 4429981 (+) True G59172
TU79382 other upstream 505884 4117279 ~ 4117631 (+) True G59086
TU79671 other downstream 429112 5053266 ~ 5351131 (+) False fbrsl1
TU79728 other downstream 823982 5448136 ~ 5453494 (+) False golga3
TU79729 other downstream 823982 5448136 ~ 5453494 (+) False golga3
TU79733 other downstream 871001 5495155 ~ 5497754 (+) True G59347
TU79987 other downstream 2050763 6674917 ~ 6677484 (+) False kat6a

Expression Profile