RNA id: TU79672


Basic Information

Item Value
RNA id TU79672
length 208
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G59296
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 4901983 ~ 4902190 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagaagtgaattacctgtatgtgtgaaaacagctttatctcacgcatccgttttgttgttgttgaatatatagccccccccaaaaaaaatactcaaaccaatttatatttccacaaaattggcatgaataatcataattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79601 lncRNA upstream 233128 4644632 ~ 4668855 (+) True G59247
TU79594 lncRNA upstream 277829 4623515 ~ 4624154 (+) True G59240
TU79568 lncRNA upstream 283950 4572152 ~ 4618033 (+) False LOC120560573
TU79556 lncRNA upstream 343918 4557005 ~ 4558065 (+) True G59218
TU79552 lncRNA upstream 346532 4554542 ~ 4555451 (+) False G59217
TU79673 lncRNA downstream 8880 4911070 ~ 4911289 (+) True G59297
TU79676 lncRNA downstream 62706 4964896 ~ 5005173 (+) False G59299
TU79677 lncRNA downstream 62706 4964896 ~ 5005689 (+) True G59299
TU79675 lncRNA downstream 103270 5005460 ~ 5005815 (+) False G59299
TU79667 lncRNA downstream 449050 5351240 ~ 5355702 (+) False fbrsl1
XM_039804473.1 mRNA upstream 160852 4737940 ~ 4741131 (+) True rpl35
XM_039803622.1 mRNA upstream 166661 4704717 ~ 4735322 (+) False golga1
XM_039802814.1 mRNA downstream 151043 5053233 ~ 5370868 (+) True fbrsl1
XM_039802815.1 mRNA downstream 151043 5053233 ~ 5370868 (+) False fbrsl1
XM_039802823.1 mRNA downstream 151043 5053233 ~ 5370868 (+) False fbrsl1
XM_039802827.1 mRNA downstream 151043 5053233 ~ 5370868 (+) False fbrsl1
XM_039802817.1 mRNA downstream 151043 5053233 ~ 5370868 (+) False fbrsl1
TU79509 other upstream 370818 4530110 ~ 4531165 (+) False mrpl41
unassigned_transcript_242 other upstream 469244 4432668 ~ 4432739 (+) True trnaq-uug_2
unassigned_transcript_241 other upstream 469730 4432171 ~ 4432253 (+) True trnal-aag_1
TU79482 other upstream 472002 4424141 ~ 4429981 (+) True G59172
TU79382 other upstream 784352 4117279 ~ 4117631 (+) True G59086
TU79671 other downstream 151076 5053266 ~ 5351131 (+) False fbrsl1
TU79728 other downstream 545946 5448136 ~ 5453494 (+) False golga3
TU79729 other downstream 545946 5448136 ~ 5453494 (+) False golga3
TU79733 other downstream 592965 5495155 ~ 5497754 (+) True G59347
TU79987 other downstream 1772727 6674917 ~ 6677484 (+) False kat6a

Expression Profile