RNA id: TU79728


Basic Information

Item Value
RNA id TU79728
length 850
RNA type TUCP
GC content 0.51
exon number 5
gene id golga3
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 5448061 ~ 5469210 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGAAACCAAACAGCCACGTAGTAAAAGCGGCGAAGCTCGCAAAAGGTgctggctgtgttcagaagtgTTCCTGGACACTGGCATGCTCCCAGCTGGCCTGTCTCCTAAAATGATGGTTTTGTGAGAAGTTGTTTCCGAAGGGGCACCAGCAGTATTGTGACTGTTCAGTTTCTTTATGGAAATGGAtactaaccaatcagaagcagcTCACATGGAGGCTAATGCCTATCAAggagaccatggtataaaatCCAAAGTGGAAGgtgaaaaacaattaaaacaacaaGGACTGGACAACGCACAAAACCTAAAAGGGGATTTTCATAATGGTGCTGTCAGTTTAGATGCGATGCCAAATGGAAACGGACTGGCAGAGGACTTGAGTGCTGCAGGGACGACCCATATTAATGGTTCCCTGTCTCCGACACCCCCTCCCCAGAGCACCAGCTCCCCTGTCAACTCCCAGACCCAAGAGCCCTCCCCAGGTTTGGCTGCTTTACCACCCATGATGCTAGAGAAGTCTCAGGGGGCTAGTGCTGAGATCACGGTTCACAAGGGTGATTCATTGCAGTCCCTCAGACTCAGTATGCCTATGCAGGAGACTCAATTGTCAAACCAGAAGCCCTCGCTGGATATGGAGAATGAGGAAAAGATTCGCCTGGAGGCTCGCCGGCGTCTGGAGGAGCAACTCAAACAGTACAGAGTGCAGAGACATAAGGAGAGGTCTCACCGCACCACCCCCAAGAACAGGCCATTCAGCACCCTGGATCCAGAGCTCATGCTGCATCCTGAGGGTCTACCCAGGGCAAACACTGTTGCCATGACAACGGAGTATTCCTTCATGAGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79718 lncRNA upstream 66672 5381193 ~ 5381464 (+) True G59336
TU79667 lncRNA upstream 92434 5351240 ~ 5355702 (+) False fbrsl1
XR_005639477.1 lncRNA upstream 394921 4898858 ~ 5053215 (+) True LOC120560386
XR_005639476.1 lncRNA upstream 394921 4898858 ~ 5053215 (+) False LOC120560386
TU79675 lncRNA upstream 442321 5005460 ~ 5005815 (+) False G59299
TU79739 lncRNA downstream 135096 5588590 ~ 5588900 (+) True G59350
TU79744 lncRNA downstream 137076 5590570 ~ 5594942 (+) True G59353
TU79745 lncRNA downstream 155837 5609331 ~ 5614090 (+) True G59354
TU79862 lncRNA downstream 509919 5963413 ~ 5963662 (+) True G59433
TU79863 lncRNA downstream 510976 5964470 ~ 5964835 (+) True G59434
XM_039803023.1 mRNA upstream 31265 5390687 ~ 5416871 (+) True chfr
XM_039802814.1 mRNA upstream 77268 5053233 ~ 5370868 (+) True fbrsl1
XM_039802815.1 mRNA upstream 77268 5053233 ~ 5370868 (+) False fbrsl1
XM_039802823.1 mRNA upstream 77268 5053233 ~ 5370868 (+) False fbrsl1
XM_039802827.1 mRNA upstream 77268 5053233 ~ 5370868 (+) False fbrsl1
XM_039802574.1 mRNA downstream 15812 5469306 ~ 5488700 (+) False ankle2
XM_039802575.1 mRNA downstream 15944 5469438 ~ 5488700 (+) False ankle2
XM_039802573.1 mRNA downstream 17104 5470598 ~ 5488700 (+) True ankle2
XM_039802581.1 mRNA downstream 50235 5503729 ~ 5586377 (+) True zdhhc8b
XM_039802583.1 mRNA downstream 142072 5595566 ~ 5607029 (+) True trmt2a
TU79671 other upstream 97005 5053266 ~ 5351131 (+) False fbrsl1
TU79509 other upstream 916971 4530110 ~ 4531165 (+) False mrpl41
unassigned_transcript_242 other upstream 1015397 4432668 ~ 4432739 (+) True trnaq-uug_2
unassigned_transcript_241 other upstream 1015883 4432171 ~ 4432253 (+) True trnal-aag_1
TU79482 other upstream 1018155 4424141 ~ 4429981 (+) True G59172
TU79733 other downstream 41661 5495155 ~ 5497754 (+) True G59347
TU79987 other downstream 1221423 6674917 ~ 6677484 (+) False kat6a
TU80145 other downstream 1515639 6969133 ~ 6976802 (+) False add2
XR_005639484.1 other downstream 2146599 7600093 ~ 7623699 (+) False susd1
TU80342 other downstream 2172313 7625807 ~ 7629074 (+) False zbtb26