RNA id: TU79733


Basic Information

Item Value
RNA id TU79733
length 1667
RNA type TUCP
GC content 0.48
exon number 2
gene id G59347
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 5495155 ~ 5497754 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGGACATGTGCACGGACATGTGGGCAGCAGAGCGCTACAAGGATATGCAAATGATACAGAATCTCAGGCCTACAGCACGCTCTAGAGGTAGAGTGGTTGTAGCTTCGCTCACCACAGCGTCGGGCTTCCAGTGAGTGACCGGTGGAACCGGCTCGATAGGTGCACCCTCTCTCAGCAAATCACAGCTCACCAGCTCCACTCCTAGACCTGAGAGGTGTTTGCTGATTATATTTGCAGTCTCCGTGGCCCTGGCCATGCTGGAGTGGACCAGAACATCATACTTGAGTCCCAACGCTGCCAACCGCTTTCCCGTGAACTCAGCCTGCTCACGACCTGGGAAGTGGAGACACAGGGGTCATTTTGTCAGAAACGGCCTGTCAGAAACGGCCTGTCAGAAACGGTCTGTCAGAAACGGCCATTTGGGTAGGACAACAGGCAAGCAAACAAACAGAGATCATTCTGCTGTCAGGGTGGTACTAGAGCCTGCCtacggagagcctgttcactccctatttaGCCCGATTGCACCGAATTTgattgcagttccaccagagttccactgggggagATCGCGGGCGAGTGCAAAATtgatgggagtctatggagctagacagctaaatttgtctctttcgcccgaTTGCCGTTGacaaatctcagatttgattgtagtttttgcaagttcaacatgggttataggtcgaaagttgaatgaacgagtacttatgtcctttcgatttcttacaggttgagtcgttgttgcccataacacgctagcattccgCTAATGAATGccgattggtcagtgaaggactgattacgaccaGAGATCCCGCTTGATGGCATCCAAAgcggaaccagaatgtcagagcccgtctaaaacattagcaaaccaaaactctttctagcacgtgcaTTGccagggagagcctaacctgtcagctgtgttgtcgatgcctccagagaaaagaggaagggactcagagcttgccgtaaaacagtatctctggccgtatatgtgtatgacgtcattgacattttaaaaggcttttttgaacaaaaaagtgactttaaaaaaatctaacacccagcagtgtatattttctttgcctcccctttcgaatgcaacaatcaaattactagacaaaaaaatgATATGCTGAGagaagtggattttgaggggtatagctccatagacatcCATTCATTCTGCAGTTGCCCGTGAGCGCCCTCATATGGAACCcgagtggaactgcaaccagttcagaagccggatgTTTCcccgagagtggaagttctccccttattagacattccCTGGTGAACATGTATGCTATTACGCTATCAGAGACAGAACTGTAATTTATTGAAGCTAGATCCAAGCATCAATGTGTTTCCTCTGTGTGACTAAAATTACTTAACAGactgctgtctgtctggtcaACTTTCCATGTGACTTAAGTGGAAACAAGGACCTAATGGAGTGAGGATCCTCTCCTTGTCGCTGTTCCCACTCAGGATGTACTGGGAGTGTCTGATGAGGAGAATATTGCGTGTAGCTTTTGGTTTGCCGTTGTCCTGCTCGGAGCTGGGGTCTTCAGTtgcattttctttcttcttcccatTGGTCAGTGCAGATGGGtctctcctgaacagaggtaaGACGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79718 lncRNA upstream 113691 5381193 ~ 5381464 (+) True G59336
TU79667 lncRNA upstream 139453 5351240 ~ 5355702 (+) False fbrsl1
TU79675 lncRNA upstream 489340 5005460 ~ 5005815 (+) False G59299
TU79677 lncRNA upstream 489466 4964896 ~ 5005689 (+) True G59299
TU79676 lncRNA upstream 489982 4964896 ~ 5005173 (+) False G59299
TU79739 lncRNA downstream 90836 5588590 ~ 5588900 (+) True G59350
TU79744 lncRNA downstream 92816 5590570 ~ 5594942 (+) True G59353
TU79745 lncRNA downstream 111577 5609331 ~ 5614090 (+) True G59354
TU79862 lncRNA downstream 465659 5963413 ~ 5963662 (+) True G59433
TU79863 lncRNA downstream 466716 5964470 ~ 5964835 (+) True G59434
XM_039802574.1 mRNA upstream 6455 5469306 ~ 5488700 (+) False ankle2
XM_039802575.1 mRNA upstream 6455 5469438 ~ 5488700 (+) False ankle2
XM_039802573.1 mRNA upstream 6455 5470598 ~ 5488700 (+) True ankle2
XM_039803024.1 mRNA upstream 25945 5448061 ~ 5469210 (+) True golga3
XM_039803023.1 mRNA upstream 78284 5390687 ~ 5416871 (+) True chfr
XM_039802581.1 mRNA downstream 5975 5503729 ~ 5586377 (+) True zdhhc8b
XM_039802583.1 mRNA downstream 97812 5595566 ~ 5607029 (+) True trmt2a
XM_039802584.1 mRNA downstream 97895 5595649 ~ 5607029 (+) False trmt2a
XM_039802588.1 mRNA downstream 170521 5668275 ~ 5962072 (+) True arvcfb
XM_039802587.1 mRNA downstream 170521 5668275 ~ 5962072 (+) False arvcfb
TU79728 other upstream 41661 5448136 ~ 5453494 (+) False golga3
TU79729 other upstream 41661 5448136 ~ 5453494 (+) False golga3
TU79671 other upstream 144024 5053266 ~ 5351131 (+) False fbrsl1
TU79509 other upstream 963990 4530110 ~ 4531165 (+) False mrpl41
unassigned_transcript_242 other upstream 1062416 4432668 ~ 4432739 (+) True trnaq-uug_2
TU79987 other downstream 1177163 6674917 ~ 6677484 (+) False kat6a
TU80145 other downstream 1471379 6969133 ~ 6976802 (+) False add2
XR_005639484.1 other downstream 2102339 7600093 ~ 7623699 (+) False susd1
TU80342 other downstream 2128053 7625807 ~ 7629074 (+) False zbtb26
XR_005639603.1 other downstream 2186891 7684645 ~ 7684763 (+) True LOC120561481

Expression Profile