RNA id: TU79804


Basic Information

Item Value
RNA id TU79804
length 955
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC120561494
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 5589573 ~ 5591810 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCAAAGAGTTCATTGGGTTACTAGGAATTGTAATCCATTTTACATGGTAACATGCCATTATTGTCAGGGCCCCTAATGCATTGCTCAGGTTTAAGTGATGTGCAGACTCACTCTGTTCTTTGCTGTTCACTCCAGCCTCGAACTTTTTCTGTCTGCTACATAAACATGCAGAATGTAACACACACTGTTTTTTtttttttttttttcttttttttttattctgaagCAGAGTTTGTAGGGGGAGAGGATAATGTAGCCTGCTGGTTAGCAGCACAGGGCCAGGGACCAGACATTATGGAGGTGCACTATACACATAAAAACCCATGATGCATCTCAGTGGGCCTTCTTACCCTGTCCACTGTCCATGCTTCCACTGTTAGAAACCGCAAGTGAGGTGAAGACCTCTCAGTGGATGCCTTGTAGAAGTAGTTGTTCCTTGGTTCCTTCTTTCATTAGTTCTGTTGGGAACTGACTAGAAGAGGAATCCACTCCAGGCAGTTGAGGGGCCTCAGATGCGTGCTGCAGAGCTCAGCGTCAACTGATGACTGACTGATAGGAGATCAGATGCACATAGCAAagcttttccttttttgttttaattatctGAAAACCAATAAGTCCAAAGTCAACGGTTCATCATAGTTTGGTGCAGCTATTCTCTGACTTAAGTTCCTCACCAGGAAATGGAGTTTGCATTCTTTAGATCATAACATTCCCAGACTTTAAGCATGTAGAGTATATGTAACTGTGTGCCCTATCTGATCTGTGTGCTCACCaccctctccttttctttccacTAATTGAGTTGTTAACCTTGCCTCTAAAGTGCATCTAAGTGCCAGTGCATCTGTAAATACATGTATATGGATGAAATGTTGCTTTTCATTTGAACTCAAATGATTTGAAATGTTTCCTCCACCTTCGAATAAAAGCTGTCAAAGACCATGTTTGCAT

Function

GO:

id name namespace
GO:1990904 ribonucleoprotein complex cellular_component

KEGG:

id description
ko03040 Spliceosome
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79783 lncRNA downstream 74209 5467335 ~ 5515364 (-) True G59388
TU79766 lncRNA downstream 135678 5435419 ~ 5453895 (-) True G59373
TU79692 lncRNA downstream 583910 5004966 ~ 5005663 (-) False G59314
XR_005639428.1 lncRNA upstream 37306 5629116 ~ 5633186 (-) True LOC120560122
TU79818 lncRNA upstream 37313 5629123 ~ 5630066 (-) False LOC120560122
TU79871 lncRNA upstream 38940 5630750 ~ 5631797 (-) True G59437
TU79874 lncRNA upstream 50505 5642315 ~ 5642551 (-) True G59440
TU79875 lncRNA upstream 50806 5642616 ~ 5642842 (-) True G59441
XM_039802580.1 mRNA downstream 90677 5488756 ~ 5498896 (-) False pgam5
XM_039802579.1 mRNA downstream 90677 5488756 ~ 5498896 (-) False pgam5
XM_039802577.1 mRNA downstream 90678 5488756 ~ 5498895 (-) False pgam5
XM_039802576.1 mRNA downstream 90678 5488756 ~ 5498895 (-) True pgam5
XM_039804217.1 mRNA downstream 144109 5421621 ~ 5445464 (-) False si:dkey-112e17.1
XM_039802582.1 mRNA upstream 15221 5607031 ~ 5626385 (-) True dgcr8
XM_039804097.1 mRNA upstream 51394 5643204 ~ 5667209 (-) False tango2
XM_039804096.1 mRNA upstream 51394 5643204 ~ 5667209 (-) True tango2
XM_039802025.1 mRNA upstream 457153 6048963 ~ 6061862 (-) True tbx1
XM_039802026.1 mRNA upstream 457153 6048963 ~ 6061861 (-) False tbx1
XR_005639605.1 other downstream 123136 5466223 ~ 5466437 (-) True LOC120561493
TU79521 other downstream 1153257 4432844 ~ 4436316 (-) False LOC120560375
TU79519 other downstream 1154505 4432844 ~ 4435068 (-) False LOC120560375
TU79518 other downstream 1154505 4433125 ~ 4435068 (-) False LOC120560375
TU79517 other downstream 1159532 4424190 ~ 4430041 (-) False sub1b
TU79960 other upstream 834396 6426206 ~ 6426786 (-) False G59521
TU79962 other upstream 834396 6426206 ~ 6426811 (-) True G59521
TU79959 other upstream 834440 6426250 ~ 6426786 (-) False G59521
TU79961 other upstream 834440 6426250 ~ 6426811 (-) False G59521
TU80011 other upstream 930949 6522759 ~ 6523674 (-) True G59563

Expression Profile