RNA id: TU79908


Basic Information

Item Value
RNA id TU79908
length 259
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G59471
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 6003612 ~ 6003870 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctaccaattcccacaggtgttccaacctgtctggattacttacaaccccctctgtttgtataaaaggattgttggaacacactgtggtaccgtaccctcatgagcattatttgaacagtattgtactgcagaaagtagtgtgttgccataaaaatggcgggaaaaaggcaattaacaatggaagagagacagaccatcataacacttaaaggaacacgccgacttattgggaatttagcttattcaccgtaacccccag

Function

GO:

id name namespace
GO:0000041 transition metal ion transport biological_process
GO:0006826 iron ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79863 lncRNA upstream 38777 5964470 ~ 5964835 (+) True G59434
TU79862 lncRNA upstream 39950 5963413 ~ 5963662 (+) True G59433
TU79745 lncRNA upstream 389522 5609331 ~ 5614090 (+) True G59354
TU79744 lncRNA upstream 408670 5590570 ~ 5594942 (+) True G59353
TU79739 lncRNA upstream 414712 5588590 ~ 5588900 (+) True G59350
TU79937 lncRNA downstream 148446 6152316 ~ 6152581 (+) True G59499
TU79940 lncRNA downstream 188208 6192078 ~ 6192278 (+) True G59502
TU79942 lncRNA downstream 216712 6220582 ~ 6220856 (+) True G59504
TU79944 lncRNA downstream 244199 6248069 ~ 6248358 (+) True G59506
TU79953 lncRNA downstream 330109 6333979 ~ 6334214 (+) True G59515
XM_039803939.1 mRNA upstream 8208 5966810 ~ 5995404 (+) True txnrd2.2
XM_039802599.1 mRNA upstream 41540 5668277 ~ 5962072 (+) False arvcfb
XM_039804197.1 mRNA downstream 6648 6010518 ~ 6041664 (+) True gnb1l
XM_039804198.1 mRNA downstream 10651 6014521 ~ 6041664 (+) False gnb1l
XM_039803237.1 mRNA downstream 494243 6498113 ~ 6627092 (+) True sema4c
XM_039803238.1 mRNA downstream 494243 6498113 ~ 6627092 (+) False sema4c
XM_039803239.1 mRNA downstream 550802 6554672 ~ 6627092 (+) False sema4c
TU79733 other upstream 505858 5495155 ~ 5497754 (+) True G59347
TU79728 other upstream 550118 5448136 ~ 5453494 (+) False golga3
TU79729 other upstream 550118 5448136 ~ 5453494 (+) False golga3
TU79671 other upstream 652481 5053266 ~ 5351131 (+) False fbrsl1
TU79509 other upstream 1472447 4530110 ~ 4531165 (+) False mrpl41
TU79987 other downstream 671047 6674917 ~ 6677484 (+) False kat6a
TU80145 other downstream 965263 6969133 ~ 6976802 (+) False add2
XR_005639484.1 other downstream 1596223 7600093 ~ 7623699 (+) False susd1
TU80342 other downstream 1621937 7625807 ~ 7629074 (+) False zbtb26
XR_005639603.1 other downstream 1680775 7684645 ~ 7684763 (+) True LOC120561481

Expression Profile