RNA id: TU79942


Basic Information

Item Value
RNA id TU79942
length 275
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G59504
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 6220582 ~ 6220856 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACGGTgtctcagtggttagcacttctgcctcacagcaagaaggttctgggttcgatcCCAGGTCgtcccaggcctttctgtgtggagtttgcatgttctccccgtgcttgcgtgggttttctccgggtgctccggtttcttcccaccacaaagacatgcatgcaactaggactacagttgaaaattagcccactggctaacactggcgcatttacagaaatgttgattaatgtgcattgtcctaatataaataaacatatcttCTTCTCTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79940 lncRNA upstream 28304 6192078 ~ 6192278 (+) True G59502
TU79937 lncRNA upstream 68001 6152316 ~ 6152581 (+) True G59499
TU79908 lncRNA upstream 216712 6003612 ~ 6003870 (+) True G59471
TU79863 lncRNA upstream 255747 5964470 ~ 5964835 (+) True G59434
TU79862 lncRNA upstream 256920 5963413 ~ 5963662 (+) True G59433
TU79944 lncRNA downstream 27213 6248069 ~ 6248358 (+) True G59506
TU79953 lncRNA downstream 113123 6333979 ~ 6334214 (+) True G59515
TU79954 lncRNA downstream 113638 6334494 ~ 6334791 (+) True G59516
TU79990 lncRNA downstream 519808 6740664 ~ 6740928 (+) True G59544
TU79989 lncRNA downstream 520185 6741041 ~ 6741289 (+) True G59543
XM_039804197.1 mRNA upstream 178918 6010518 ~ 6041664 (+) True gnb1l
XM_039804198.1 mRNA upstream 178918 6014521 ~ 6041664 (+) False gnb1l
XM_039803939.1 mRNA upstream 225178 5966810 ~ 5995404 (+) True txnrd2.2
XM_039802600.1 mRNA upstream 258510 5817919 ~ 5962072 (+) False arvcfb
XM_039803237.1 mRNA downstream 277257 6498113 ~ 6627092 (+) True sema4c
XM_039803238.1 mRNA downstream 277257 6498113 ~ 6627092 (+) False sema4c
XM_039803239.1 mRNA downstream 333816 6554672 ~ 6627092 (+) False sema4c
XM_039803240.1 mRNA downstream 333816 6554672 ~ 6625643 (+) False sema4c
XM_039804233.1 mRNA downstream 410735 6631591 ~ 6648978 (+) False cdca2
TU79733 other upstream 722828 5495155 ~ 5497754 (+) True G59347
TU79728 other upstream 767088 5448136 ~ 5453494 (+) False golga3
TU79729 other upstream 767088 5448136 ~ 5453494 (+) False golga3
TU79671 other upstream 869451 5053266 ~ 5351131 (+) False fbrsl1
TU79509 other upstream 1689417 4530110 ~ 4531165 (+) False mrpl41
TU79987 other downstream 454061 6674917 ~ 6677484 (+) False kat6a
TU80145 other downstream 748277 6969133 ~ 6976802 (+) False add2
XR_005639484.1 other downstream 1379237 7600093 ~ 7623699 (+) False susd1
TU80342 other downstream 1404951 7625807 ~ 7629074 (+) False zbtb26
XR_005639603.1 other downstream 1463789 7684645 ~ 7684763 (+) True LOC120561481

Expression Profile