RNA id: TU79943



Basic Information


Item Value
RNA id TU79943
length 266
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G59505
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 6220585 ~ 6220850 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AGAAGaagatatgtttatttatattaggacaatgcacattaatcaacatttctgtaaatgcgccagtgttagccagtgggctaattttcaactgtagtcctagttgcatgcatgtctttgtggtgggaagaaaccggagcacccggagaaaacccacgcaagcacggggagaacatgcaaactccacacagaaaggcctgggacGACCTGGgatcgaacccagaaccttcttgctgtgaggcagaagtgctaaccactgagacACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU79939 lncRNA downstream 42615 6177751 ~ 6177970 (-) True G59501
TU79892 lncRNA downstream 259435 5958908 ~ 5961150 (-) True G59457
TU79875 lncRNA downstream 577743 5642616 ~ 5642842 (-) True G59441
TU79874 lncRNA downstream 578034 5642315 ~ 5642551 (-) True G59440
TU79871 lncRNA downstream 588788 5630750 ~ 5631797 (-) True G59437
TU79945 lncRNA upstream 27783 6248633 ~ 6248878 (-) True G59507
TU79946 lncRNA upstream 31355 6252205 ~ 6252412 (-) True G59508
TU79957 lncRNA upstream 189535 6410385 ~ 6411300 (-) True G59519
TU79972 lncRNA upstream 263940 6484790 ~ 6485023 (-) True G59531
TU80053 lncRNA upstream 519810 6740660 ~ 6740910 (-) True G59598
XM_039802025.1 mRNA downstream 158723 6048963 ~ 6061862 (-) True tbx1
XM_039802026.1 mRNA downstream 158724 6048963 ~ 6061861 (-) False tbx1
XM_039804097.1 mRNA downstream 553376 5643204 ~ 5667209 (-) False tango2
XM_039804096.1 mRNA downstream 553376 5643204 ~ 5667209 (-) True tango2
XM_039802582.1 mRNA downstream 594200 5607031 ~ 5626385 (-) True dgcr8
XM_039803522.1 mRNA upstream 674352 6895202 ~ 6941736 (-) True hk2
XM_039802066.1 mRNA upstream 940451 7161301 ~ 7169700 (-) True ch25hl3
XM_039803504.1 mRNA upstream 961963 7182813 ~ 7212011 (-) True erlin2
XM_039803947.1 mRNA upstream 999991 7220841 ~ 7223583 (-) True LOC120561006
XM_039803946.1 mRNA upstream 1000691 7221541 ~ 7223583 (-) False LOC120561006
XR_005639606.1 other downstream 628877 5591582 ~ 5591708 (-) False LOC120561494
XR_005639605.1 other downstream 754148 5466223 ~ 5466437 (-) True LOC120561493
TU79521 other downstream 1784269 4432844 ~ 4436316 (-) False LOC120560375
TU79519 other downstream 1785517 4432844 ~ 4435068 (-) False LOC120560375
TU79960 other upstream 205356 6426206 ~ 6426786 (-) False G59521
TU79962 other upstream 205356 6426206 ~ 6426811 (-) True G59521
TU79959 other upstream 205400 6426250 ~ 6426786 (-) False G59521
TU79961 other upstream 205400 6426250 ~ 6426811 (-) False G59521
TU80011 other upstream 301909 6522759 ~ 6523674 (-) True G59563

Expression Profile