RNA id: TU79945



Basic Information


Item Value
RNA id TU79945
length 246
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G59507
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 6248633 ~ 6248878 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


cctgtccataaatattacaaacaggattggtgacaaagcgcagccctggcggaggccaaccctcacctgaaacgagtccgacttactgccgagaacccggacacagctctcactttggtcgtacagagattggatggccctgagtagagaccccctcaccccatactcccgcagcacctcccacagtatctcccgggggacccggtcatacgccttctccaaatccacaaaacacatgtagaccgg

Function


GO: NA

KEGG:

id description
ko00350 Tyrosine metabolism
ko04916 Melanogenesis

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU79943 lncRNA downstream 27783 6220585 ~ 6220850 (-) True G59505
TU79939 lncRNA downstream 70663 6177751 ~ 6177970 (-) True G59501
TU79892 lncRNA downstream 287483 5958908 ~ 5961150 (-) True G59457
TU79875 lncRNA downstream 605791 5642616 ~ 5642842 (-) True G59441
TU79874 lncRNA downstream 606082 5642315 ~ 5642551 (-) True G59440
TU79946 lncRNA upstream 3327 6252205 ~ 6252412 (-) True G59508
TU79957 lncRNA upstream 161507 6410385 ~ 6411300 (-) True G59519
TU79972 lncRNA upstream 235912 6484790 ~ 6485023 (-) True G59531
TU80053 lncRNA upstream 491782 6740660 ~ 6740910 (-) True G59598
TU80054 lncRNA upstream 492165 6741043 ~ 6741332 (-) True G59599
XM_039802025.1 mRNA downstream 186771 6048963 ~ 6061862 (-) True tbx1
XM_039802026.1 mRNA downstream 186772 6048963 ~ 6061861 (-) False tbx1
XM_039804097.1 mRNA downstream 581424 5643204 ~ 5667209 (-) False tango2
XM_039804096.1 mRNA downstream 581424 5643204 ~ 5667209 (-) True tango2
XM_039802582.1 mRNA downstream 622248 5607031 ~ 5626385 (-) True dgcr8
XM_039803522.1 mRNA upstream 646324 6895202 ~ 6941736 (-) True hk2
XM_039802066.1 mRNA upstream 912423 7161301 ~ 7169700 (-) True ch25hl3
XM_039803504.1 mRNA upstream 933935 7182813 ~ 7212011 (-) True erlin2
XM_039803947.1 mRNA upstream 971963 7220841 ~ 7223583 (-) True LOC120561006
XM_039803946.1 mRNA upstream 972663 7221541 ~ 7223583 (-) False LOC120561006
XR_005639606.1 other downstream 656925 5591582 ~ 5591708 (-) False LOC120561494
XR_005639605.1 other downstream 782196 5466223 ~ 5466437 (-) True LOC120561493
TU79521 other downstream 1812317 4432844 ~ 4436316 (-) False LOC120560375
TU79519 other downstream 1813565 4432844 ~ 4435068 (-) False LOC120560375
TU79960 other upstream 177328 6426206 ~ 6426786 (-) False G59521
TU79962 other upstream 177328 6426206 ~ 6426811 (-) True G59521
TU79959 other upstream 177372 6426250 ~ 6426786 (-) False G59521
TU79961 other upstream 177372 6426250 ~ 6426811 (-) False G59521
TU80011 other upstream 273881 6522759 ~ 6523674 (-) True G59563

Expression Profile