RNA id: TU79987


Basic Information

Item Value
RNA id TU79987
length 1174
RNA type TUCP
GC content 0.52
exon number 2
gene id kat6a
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 6674864 ~ 6718884 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTTTCACTCAAAGATGGCGTCGGCTCTAGAACCCCTGGTCTTTGGCTGCATTTTTTAGGCTTGTTGTTGTCTCCGTTTCGCACTGTTTTGGCACCTTCTCCTCGGCGGCTCGACACGAAATCCCGGCTATGTCAGCTACCGAAGCGCAATAGGCAGGTGATCAGTTGTGGTTGCTCCCTGGGGTGAGATATCTCTTCCGTCCCAGAGCTGTGAAGCTCAGACTGCTGGAAGAGTAAAAGACAGCGAGAGCAAAGTAAAGACGAGGACACGTGGGTgcaggataaaaaaaagtcaccaTCTTGTGGAATGTTATAATCTTCAGAAAACATTTACTGTGTTGCCCTCACCATAATCATTGAAACACAAATTTCTTGGAGACCATGATCGTCGTTCACAACTCGCATTGAGAATTGGCTAGTTTGCCAGTGGCAGGAAACTGACTGAGCAGTTTTTATTGTCCGTGTATAGGTACTTTGCGACAGGCAAAGTGGGAAACGCCTTATTTTTTTGAAGGCCCTTGTTATTGTCAACATCTACTCTACCCTACGTTGTGTGCATTGGGAGTTTAAGTTGAGAACAGACCTGCTACTtcctccactccccctgcttCTCGCCAGGGACCTTCACCTGGCTGGGAGTGGGTGGTGGGTGGACTGCATTTTACCAGGTGGAGTGTTGGCTCAGGGGGTTTGTGCTATGGTCAGCTGCTCATTACCGTGCTGCTCATACTCAGCTTCTGAGGGACTCTCTGTGCGACCCCAGGACAAGGGATAATACGCAGGCAGGGGGCAAAGAACAGGAGGCGGCGCTACGGCGCAGGCCAGGTGTTTCCTTGGCTTACAgtccctttttgtgtgtgtggtcattgCGGTAAGGCCTCAGGGCCCCCGTGCCCACCCAGACCGCAGCCATGGTGAAACTGGCCAACCCAATGTACACCCAATGGATCCTAGAGGCCATCAAGAAGGTGAAGAAGCAAAAGCAGAGACCATCAGAGGAGCGCATTTGCAATGCGGTCTCCATGTCCCATGGTCTGGACCGCAAAACGGTTCTGGAGCAGTTAGAGCTCAGCGTCAAGGATGGTACCATCCTCAAGGTCACCAACAAAGGTCTAAACTCCTACAAGGACCCTGACAACCCAGGGCGCTTGGCTCTGCCCAAGCCCAAAGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79954 lncRNA upstream 340126 6334494 ~ 6334791 (+) True G59516
TU79953 lncRNA upstream 340703 6333979 ~ 6334214 (+) True G59515
TU79944 lncRNA upstream 426559 6248069 ~ 6248358 (+) True G59506
TU79942 lncRNA upstream 454061 6220582 ~ 6220856 (+) True G59504
TU79940 lncRNA upstream 482639 6192078 ~ 6192278 (+) True G59502
TU79990 lncRNA downstream 63180 6740664 ~ 6740928 (+) True G59544
TU79989 lncRNA downstream 63557 6741041 ~ 6741289 (+) True G59543
TU80085 lncRNA downstream 137764 6815248 ~ 6815506 (+) True G59627
TU80153 lncRNA downstream 332162 7009646 ~ 7050772 (+) False zgc:65851
TU80156 lncRNA downstream 349814 7027298 ~ 7029309 (+) True G59687
XM_039804233.1 mRNA upstream 25939 6631591 ~ 6648978 (+) False cdca2
XM_039804232.1 mRNA upstream 25939 6631592 ~ 6648978 (+) True cdca2
XM_039804230.1 mRNA upstream 25939 6631592 ~ 6648978 (+) False cdca2
XM_039804229.1 mRNA upstream 25939 6631971 ~ 6648978 (+) False cdca2
XM_039804234.1 mRNA upstream 25939 6638778 ~ 6648978 (+) False cdca2
XM_039803943.1 mRNA downstream 50295 6727779 ~ 6738309 (+) True ap3m2
XM_039802400.1 mRNA downstream 74804 6752288 ~ 6796697 (+) False tet3
XM_039802403.1 mRNA downstream 82628 6760112 ~ 6796697 (+) False tet3
XM_039802406.1 mRNA downstream 82628 6760112 ~ 6796697 (+) False tet3
XM_039802401.1 mRNA downstream 88903 6766387 ~ 6796697 (+) False tet3
TU79733 other upstream 1177163 5495155 ~ 5497754 (+) True G59347
TU79728 other upstream 1221423 5448136 ~ 5453494 (+) False golga3
TU79729 other upstream 1221423 5448136 ~ 5453494 (+) False golga3
TU79671 other upstream 1323786 5053266 ~ 5351131 (+) False fbrsl1
TU79509 other upstream 2143752 4530110 ~ 4531165 (+) False mrpl41
TU80145 other downstream 291649 6969133 ~ 6976802 (+) False add2
XR_005639484.1 other downstream 922609 7600093 ~ 7623699 (+) False susd1
TU80342 other downstream 948323 7625807 ~ 7629074 (+) False zbtb26
XR_005639603.1 other downstream 1007161 7684645 ~ 7684763 (+) True LOC120561481
XR_005639604.1 other downstream 1013190 7690674 ~ 7690792 (+) True LOC120561492

Expression Profile