RNA id: TU80169


Basic Information

Item Value
RNA id TU80169
length 2763
lncRNA type sense_over
GC content 0.43
exon number 2
gene id G59694
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 7082014 ~ 7106854 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttttttttttttttttgtTGTTTTCGCAACTgctaaagcagtggttcccaacctggggtccgggcacccctcaggggggcggcaaagatcacagggggtgcgcaagtcttgatctggtttgaggttgatttaaaaaaaaaataaaagggccactcttcttttttttttcttcttttttttaacacatgaAGATGAGTTTACTTGTTACGTATAATATCTTCGGTGGCGGAGGCAGCTTTAAGTCTGAGAAAATCGAGCCTGTGTTACGAAAAACCTTGACTTTTAACAGTCAGGGAGGATCTAAAAAACGATGAAAATGTGGGATCAAGTGTTCTACCCATACTAGGGACTAGTAGTCATGATACCTCGGCCTCTGATTCATCAATATTGACGATTTTGTCTTTTTAATCTGCCCCCAGCAACGTTGGGGGACTTCACGGAGACACTAACTTGCCGAAGTACTCCTTTTAAAACTGCCAACACAATCAGCTCTGTTAATTTGTATAGTTATGTACGTTTTTatattgacttttttattttattttaatagaaGTCTGACCAAGACATTGACTCGCGCGGAGGGCTCTGAGAAAGGTCTGCGGGGTTACtccgtcgattcgacgcagaagcgTAAAACGGCCTTTAGCAAACGTAACGGTGTGTTCAGTGTATTTGGGGCCAACTCTGGTTAGGGCAAAGATTAGGCTCTAATCAGCCTGCCATGCTCATTAACCAATCGCCTCAGGCTGTCCGTCGTGTTTATGCACACTCCTCATTTCCTTTCTCGGAAGGCAAGAATTGATTGATGCCTCATCAGCGCAAGCCAAACCAACTCTGGAGGTTTAATGAAAGCGCTCTAGGTGTTCACGTGACCCAGGCAGAGCTTTTTTGTGCTCATTGTTAAAGGACAAAACAGCAATATGAACAATCATACAGTAGTCAGTGTAGCAGGGATGTGAAGATCAGTATCCAGGTGTCGGCTTATGAATCATCTTTGTACAGTAAATGGGCGCTTcatacggaagaggattagggccacgtgtgaaaaatgtatttggctgtgtctcaaaccgcacacttctgtcagtatactgctaatgtgcactgaccaattactgccgtagtgcccactttggaTGGTTAGTGTTGTCCCAAACGGAACACTTAACGTTGAAACGCTTagcggaaatgacgagcggtcgGCTCGCCCCGCCGCCTctgaaaatctgacgaaaatctcttaaactgaccttttgtcgatctgaaatgaagacagattcagcaacggcacggcctatttctcgcttaaaatgttttcagaaacacgtttcggtgaactatttttgtaaaattcgagatcgtattctgaacgagccgccattatgatctggctttgaaattcgggagatgccagacccatgtgacgcgttcgtccaatcagctgccggtcgacgtccctggtccctcccATTTCCGCTGCgtagtcaagatggcgcccaTTTAGTGCGCGTagtgtccatcgttccacactgaactttttgaccgtttttagggggtcatccggggactttttgcgttatctccactatatacttaaaactaagtgcttgaagtgtgcaagtagacagtttgagacacagcctttGAGTTCTGAGTTCAAAAAGTCTGAatcctgacatttttttttctcctgactTTAAACTCGGATCTCAAATACGCGTTTCCACACGTGGCCCTAATTAAGCTTTACTTCATTTTGGTCATTTTAGAAACAGTTTGTCCTTTATCAGATTCTGTTCtcaaaaatctatatatttttaagcAAAAGTCTTTTTTGTAACCCAAAATTAGTTATCAGATggaattaacttttttttttttcttctaaccCTATTTGAATGTCACTCTATTCCTATTTTCGTCGAAGCCATTTAAATGTCTCTGGTTTGAGTTTAAGTCTTACGCTTAACTtcttaaagtatttattttattttactgtaagaAAACCTTTTCAAAGTCACTATATTGTACATTAAAGAAGATGTTTAGGGTTGAGTGTTTTTCAGTACTTTTTGGTTAGGGGAATATTTAAAGTATTATTGTTGCCATATTGGAGAGAGGACGGCGATGGCAGATGCGTGTCTTTTCTTTCGGTCTTTTCTTGCTGTGACTTCAGTGCAGTTGGGTGTTTTCTAGGCTTTTCCCTGGTAGCTGTCGTGTGCCATCTCCCGTGTTGCAGTGCAAGTGGAAGACTGGTGTCCAGAATTCGTAGATCTCTCCTATTTCTCCGGCTTCACTGCCTGCTGTACGGTAACCTGgtgtgttttgatgttttttggaGCTTTTAGCCCTGCAGCTCTGTACTGCCGTTCCTCTGTCTGGGTGTTAACAGTCGGCCACTAGAGAGAGCCGGAGCTCCTGTGGTCGGTTGATCGAGTGTAACACTGATTGCTGCGTCTGAGCAGTAAGGTTTGACCCTTTTTGTTTCTGCTGTTTGATACATTCCAGCAGGGCCGGGTATGGCCACTGACTTCCTAAATCGATTCCATTCCGATTCAAAAGGTCCCGATTTGATTTCCCCATTTGATTCAAATATGAATCTACCCCTCACAATAACAATTTTGCTTTGCTATGAAAGAGGTTTTCTGAGAACTAATTCTGTACAGTGTCCAAGGAATCCtctaacctggtgcattattaGAAAGATGACTGTTGTCATTAAGATTTGACCCCAAAGCCAGTTACATAGAGACAGAAACAaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80153 lncRNA upstream 31242 7009646 ~ 7050772 (+) False zgc:65851
TU80156 lncRNA upstream 52705 7027298 ~ 7029309 (+) True G59687
TU80157 lncRNA upstream 52705 7027298 ~ 7029309 (+) False G59687
TU80085 lncRNA upstream 266508 6815248 ~ 6815506 (+) True G59627
TU79989 lncRNA upstream 340725 6741041 ~ 6741289 (+) True G59543
TU80171 lncRNA downstream 72639 7179493 ~ 7183437 (+) True G59696
TU80173 lncRNA downstream 72639 7179493 ~ 7263343 (+) False G59696
TU80310 lncRNA downstream 387034 7493888 ~ 7494204 (+) True G59803
TU80312 lncRNA downstream 391635 7498489 ~ 7504014 (+) True G59804
TU80313 lncRNA downstream 391635 7498489 ~ 7500781 (+) False G59804
XM_039804240.1 mRNA upstream 31244 7043197 ~ 7050770 (+) True zgc:65851
XM_039803211.1 mRNA upstream 55127 7008164 ~ 7026887 (+) True mxd1
XM_039803119.1 mRNA upstream 74755 6997153 ~ 7007259 (+) True snrnp27
XM_039803034.1 mRNA upstream 85158 6969119 ~ 6996856 (+) True add2
XM_039803115.1 mRNA upstream 116455 6952031 ~ 6965559 (+) True figla
XM_039804327.1 mRNA downstream 1959 7108813 ~ 7136851 (+) False arhgap25
XM_039804328.1 mRNA downstream 1959 7108813 ~ 7136366 (+) False arhgap25
XM_039804325.1 mRNA downstream 6814 7113668 ~ 7136851 (+) True arhgap25
XM_039802164.1 mRNA downstream 33343 7140197 ~ 7143020 (+) True bmp10
XM_039803194.1 mRNA downstream 405185 7512039 ~ 7519772 (+) True rchy1
TU80145 other upstream 105212 6969133 ~ 6976802 (+) False add2
TU79987 other upstream 404530 6674917 ~ 6677484 (+) False kat6a
TU79733 other upstream 1584260 5495155 ~ 5497754 (+) True G59347
TU79728 other upstream 1628520 5448136 ~ 5453494 (+) False golga3
XR_005639484.1 other downstream 493239 7600093 ~ 7623699 (+) False susd1
TU80342 other downstream 518953 7625807 ~ 7629074 (+) False zbtb26
XR_005639603.1 other downstream 577791 7684645 ~ 7684763 (+) True LOC120561481
XR_005639604.1 other downstream 583820 7690674 ~ 7690792 (+) True LOC120561492
XR_005639610.1 other downstream 586237 7693091 ~ 7693209 (+) True LOC120561498

Expression Profile