RNA id: XM_039802906.1


Basic Information

Item Value
RNA id XM_039802906.1
length 2007
RNA type mRNA
GC content 0.51
exon number 2
gene id zbtb26
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 7625736 ~ 7630180 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaattggtGATGAGAGGTGACGATTGTACTGTTGTACTGGGCCTTTAAATGGATTTTGCATCCGGATTAGCGCCTTCAAATGCCCGGACAGACCTACCGATGACAACCCATCTTTAACGTGTTTGTTTAAACGGGGTTAACAGgtgcagtgctgctgctgctggctgtctGTTCACTATGGCCCAGAACCAGGTAATCCTGCAGTTCCGCTTCGCCACATTTGGGGACTCGATGCTGCAGAAGATGAACCTCCTACGACACCAGAGACGCTTCTGTGATGTCACTGTGCGCATCAACCAGCTGGAGGTCCCTGGTCACAAGGTAGTGTTTGCCGCTGGCTCGTCTTTCCTGAGGGACCAGTTCATCCTTCAGCAGGACTCCGGGGAGGTCCAGATCTCCATGATCCAGGAGGCGGAGGTGGGCCGGCAGCTCCTGCTGTCCTGCTACACAGGGCAGCTGGAGTTTCCGGAGCTGGAGCTGGTGCATTACCTGACAGTGGCCAGCTTCCTCCAAATGGGCCACATTGTGGAGCAGTGCACCCAAGCTCTCAGCAAGTTCATCAAACCTCAGCCTGCACGCCAGCTGGAGGTGGATGTGGGGATAAGGagggagaagaaggaggaggggtTATCGTCCCAGGCCCAGAGAGAGCAGGAGTGCTCTCAGATCCGGACTGTCCATCAAGAGGGGGCGGAGGTGGTGCAGGTTGGGGACGACAACAGTGGCGATAATGACGACCACGAGGATgacgatgacgatgatgatgtaATCATACAGCCTGCGTCCCCTCTTCCTAACTTAGACAAACGTCCAAAGCAGGACATGGTGGAGAGCGACATCACTATCATAAAAGTGGAGTCTGTGTCTGACGTAGCGGAAAACTCCATCACTGGTCACTTCCCCGCCAGCCCACCTCCTGCCCTCCACTCTCCTGAGCCCCAGCACTCCCTCATAAACTCCACCGTGGACAGCCGTAGCAGTGAGATGGCGGCTCCGCCCGGCGCGACCGGGTACCCGCTCAGTCCCCCTCCTGCGTACCCTCCTGCAGAGAAACACGGTGTGCACCAGAGGAACTACGACAAACCCCTCCAGTGGTACCACCAGTGTCCAAAGTGCTCGCGGGTCTTTCGCCAGCTGGAGAACTACGCCAACCACCTCAAGATGCACAAGCTGTTCATGTGCCTGCTGTGCGGCAAGACCTTCACGCAGAAGGGCAACCTGCACCGGCACATGCGGGTCCACGCCGGCATCAAGCCCTTCCAGTGTAAAATATGTGGGAAGACCTTCACGCAAAAGTGCTCTCTGCTGGATCACCTCAACCTGCACAGCGGGGACAAGCCACACCGCTGCAACTACTGCGACATGGTTTTCGCTCACAAGCCAGTTCTCCGCAAACACCTCAAACAGATCCACGGGAAGAACAGCTTTGACAACGCAAACGAAGGCAACCTGCACGATGGGGGGCTTGACTTTGATTTTGGGCAAATATGAAATCTGtagaaaactgtttttttaagtagcTTTTTTTGAATGCCATCGGCTATTTAAATGGCAGTGATGCAGACTTTACCTCGGATGGAACATTAGAATCCTAAATTTAGCAGTTTGAGAAACTGACAGtattttatacaaacagagccTGTTATTCTTTGTGTGAGAAGCCATTGATTGCATTATTGAGGATTGGCAGATGAGTGAACATGGTGGCTGGTTTCCTCTAGCCTCATCCTGATGGGTTTAACTGGAGAATGCTAACGTGAAAGGAGACGTTTTCCTTGGTCTACATTTAACTGTAGCTTCATTACtgtggacagttttttttttttttttttacaatacgTTGTAGATGCCTTCATATCGTACTTGAAAATTCAGCACTGAAACACTAAATATATAGACTGTACTTCATTAGTTTTATTGATGAATTAGCATGTCTTTGTGTCTATGCTGTccaatgagaaaaaaacatgaatgaaaAAGATCCATATGTATATTGTGTATACAGTC

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80351 lncRNA upstream 37106 7587795 ~ 7588630 (+) True G59833
TU80345 lncRNA upstream 49609 7574730 ~ 7576127 (+) False LOC120560567
TU80344 lncRNA upstream 49652 7574730 ~ 7576084 (+) False LOC120560567
TU80312 lncRNA upstream 121722 7498489 ~ 7504014 (+) True G59804
TU80343 lncRNA downstream 326 7630506 ~ 7631241 (+) True G59826
TU80363 lncRNA downstream 5415 7635595 ~ 7636054 (+) True G59837
TU80365 lncRNA downstream 16525 7646705 ~ 7647149 (+) True G59839
TU80492 lncRNA downstream 244634 7874814 ~ 7878371 (+) False atp2a2a
TU80491 lncRNA downstream 246988 7877168 ~ 7878371 (+) False atp2a2a
XM_039802897.1 mRNA upstream 2021 7600092 ~ 7623715 (+) False susd1
XM_039802898.1 mRNA upstream 2042 7600093 ~ 7623694 (+) False susd1
XM_039802896.1 mRNA upstream 2042 7600094 ~ 7623694 (+) False susd1
XM_039802903.1 mRNA upstream 2042 7600095 ~ 7623694 (+) False susd1
XM_039802900.1 mRNA upstream 2042 7600096 ~ 7623694 (+) False susd1
XM_039802907.1 mRNA downstream 2512 7632692 ~ 7639409 (+) True LOC120560421
XM_039802908.1 mRNA downstream 2512 7632692 ~ 7639409 (+) False LOC120560421
XM_039802909.1 mRNA downstream 2512 7632692 ~ 7639130 (+) False LOC120560421
XM_039803853.1 mRNA downstream 19593 7649773 ~ 7657652 (+) True LOC120560946
XM_039803854.1 mRNA downstream 19593 7649773 ~ 7657652 (+) False LOC120560946
XR_005639484.1 other upstream 2037 7600093 ~ 7623699 (+) False susd1
TU80145 other upstream 648934 6969133 ~ 6976802 (+) False add2
TU79987 other upstream 948252 6674917 ~ 6677484 (+) False kat6a
TU79733 other upstream 2127982 5495155 ~ 5497754 (+) True G59347
TU79728 other upstream 2172242 5448136 ~ 5453494 (+) False golga3
XR_005639603.1 other downstream 54465 7684645 ~ 7684763 (+) True LOC120561481
XR_005639604.1 other downstream 60494 7690674 ~ 7690792 (+) True LOC120561492
XR_005639610.1 other downstream 62911 7693091 ~ 7693209 (+) True LOC120561498
XR_005639608.1 other downstream 67747 7697927 ~ 7698045 (+) True LOC120561496
XR_005639609.1 other downstream 68953 7699133 ~ 7699251 (+) True LOC120561497

Expression Profile