RNA id: TU80363


Basic Information

Item Value
RNA id TU80363
length 460
lncRNA type intronic
GC content 0.40
exon number 1
gene id G59837
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 7635595 ~ 7636054 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTttggtatgtgtgcatgcaaatGTTTGAATGTATCTTATATATTCTAAGGAGTTTCTAGAGACCAGTCAGTTTAAGATGATATGGTCTCATAGTGAAGCCTAGCTTagaatgtgtgaatctattatgagtttgggtacaactttcacacagaggaatcggagccaggaatgtgggaatctattaggagcatcggccataaaaggtgtagtttaagagtaaaacttgtgtgctgaaatagatgtctcatgctgtgtaagcacaaaaagagtttaaaaggtattcactatgatgtacatgtggttcatccttgggcagacgtgtctgtatgctcatggttgtcccagtgtcatgaaagtttgttcactgtttgaataaagctgcacttgatttgtactcttcggactggtcgtcatctctgaggtctccctacatcatttctgaatcatcacccgatatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80343 lncRNA upstream 4354 7630506 ~ 7631241 (+) True G59826
TU80351 lncRNA upstream 46965 7587795 ~ 7588630 (+) True G59833
TU80345 lncRNA upstream 59468 7574730 ~ 7576127 (+) False LOC120560567
TU80344 lncRNA upstream 59511 7574730 ~ 7576084 (+) False LOC120560567
TU80312 lncRNA upstream 131581 7498489 ~ 7504014 (+) True G59804
TU80365 lncRNA downstream 10651 7646705 ~ 7647149 (+) True G59839
TU80492 lncRNA downstream 238760 7874814 ~ 7878371 (+) False atp2a2a
TU80491 lncRNA downstream 241114 7877168 ~ 7878371 (+) False atp2a2a
TU80483 lncRNA downstream 284723 7920777 ~ 7924556 (+) True G59931
TU80665 lncRNA downstream 590838 8226892 ~ 8227173 (+) True G60082
XM_039802906.1 mRNA upstream 5415 7625736 ~ 7630180 (+) False zbtb26
XM_039802904.1 mRNA upstream 5415 7627170 ~ 7630180 (+) True zbtb26
XM_039802900.1 mRNA upstream 11901 7600096 ~ 7623694 (+) False susd1
XM_039803853.1 mRNA downstream 13719 7649773 ~ 7657652 (+) True LOC120560946
XM_039803854.1 mRNA downstream 13719 7649773 ~ 7657652 (+) False LOC120560946
XM_039804516.1 mRNA downstream 22118 7658172 ~ 7663129 (+) True gucd1
XM_039803852.1 mRNA downstream 185251 7821305 ~ 7845805 (+) True ift81
XM_039803270.1 mRNA downstream 211617 7847671 ~ 7877124 (+) True atp2a2a
TU80342 other upstream 6521 7625807 ~ 7629074 (+) False zbtb26
XR_005639484.1 other upstream 11896 7600093 ~ 7623699 (+) False susd1
TU80145 other upstream 658793 6969133 ~ 6976802 (+) False add2
TU79987 other upstream 958111 6674917 ~ 6677484 (+) False kat6a
TU79733 other upstream 2137841 5495155 ~ 5497754 (+) True G59347
XR_005639603.1 other downstream 48591 7684645 ~ 7684763 (+) True LOC120561481
XR_005639604.1 other downstream 54620 7690674 ~ 7690792 (+) True LOC120561492
XR_005639610.1 other downstream 57037 7693091 ~ 7693209 (+) True LOC120561498
XR_005639608.1 other downstream 61873 7697927 ~ 7698045 (+) True LOC120561496
XR_005639609.1 other downstream 63079 7699133 ~ 7699251 (+) True LOC120561497

Expression Profile