RNA id: TU80421


Basic Information

Item Value
RNA id TU80421
length 434
RNA type TUCP
GC content 0.54
exon number 1
gene id G59881
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 7584086 ~ 7584519 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caggacctgactataacaactgacaactctgtggtagtccccacccagactgttagaaacctgggtgtgacacttgacgaccaactctccttcactgccaacattgctgcaactacccgatcgtgtagatacatgctgcataacatcagaaggatacgtccccttctaacgcagaaggcggctcaggttctggttcaggctctagtcatctcacgtctagactattgcaactccctcctgattaGCCtccctgcatgtgccatccgacccctgcagctcattcagaacgcagcagctcggctTGTCtacaacctccccaagttctctcaccctacaccgctcctccgctctcttcactggttaccagtggctgcccgcatccgcttcaagacactagtacttacatacagggccacgaacggatcagccccagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80418 lncRNA downstream 7511 7576229 ~ 7576575 (-) True G59878
TU80415 lncRNA downstream 8556 7574720 ~ 7575530 (-) True G59876
TU80390 lncRNA downstream 89907 7493888 ~ 7494179 (-) True G59855
TU80309 lncRNA downstream 159722 7424163 ~ 7424364 (-) True G59802
XR_005639545.1 lncRNA downstream 216165 7366257 ~ 7367921 (-) False LOC120560966
TU80413 lncRNA upstream 25910 7610429 ~ 7617135 (-) False G59875
TU80414 lncRNA upstream 25910 7610429 ~ 7614894 (-) True G59875
TU80467 lncRNA upstream 143258 7727777 ~ 7739576 (-) False specc1la
TU80515 lncRNA upstream 242622 7827141 ~ 7877205 (-) True G59951
TU80534 lncRNA upstream 317712 7902231 ~ 7902539 (-) True G59970
XM_039803200.1 mRNA downstream 33885 7528579 ~ 7550201 (-) False lrp13
XM_039803197.1 mRNA downstream 33885 7528579 ~ 7550201 (-) False lrp13
XM_039803198.1 mRNA downstream 33885 7528579 ~ 7550201 (-) False lrp13
XM_039803196.1 mRNA downstream 33885 7528579 ~ 7550201 (-) True lrp13
XM_039803195.1 mRNA downstream 57595 7523110 ~ 7526491 (-) True LOC120560563
XM_039804485.1 mRNA upstream 79277 7663796 ~ 7673551 (-) False upb1
XM_039804484.1 mRNA upstream 79277 7663796 ~ 7673551 (-) True upb1
XM_039803053.1 mRNA upstream 117840 7702359 ~ 7706496 (-) True LOC120560484
XM_039803844.1 mRNA upstream 125625 7710144 ~ 7727060 (-) True adora2aa
XM_039803848.1 mRNA upstream 143041 7727560 ~ 7766012 (-) False specc1la
unassigned_transcript_243 other downstream 72795 7511221 ~ 7511291 (-) True trnag-ccc
TU80230 other downstream 587230 6991203 ~ 6996856 (-) True G59739
TU80011 other downstream 1060412 6522759 ~ 6523674 (-) True G59563
TU79962 other downstream 1157275 6426206 ~ 6426811 (-) True G59521
TU80531 other upstream 294905 7879424 ~ 7887403 (-) False anapc7
TU80745 other upstream 816503 8401022 ~ 8402566 (-) True G60145
TU81433 other upstream 3604623 11189142 ~ 11189741 (-) True G60715
TU82089 other upstream 6004520 13589039 ~ 13589332 (-) True G61264
unassigned_transcript_252 other upstream 7354456 14938975 ~ 14939047 (-) True trnaa-agc_14

Expression Profile