RNA id: XM_039803846.1


Basic Information

Item Value
RNA id XM_039803846.1
length 7532
RNA type mRNA
GC content 0.49
exon number 17
gene id specc1la
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 7727560 ~ 7766012 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taaactagcaaagacacttgcgtcgggctttgcgctgcgctcgcttcgccgggtgcaagataggtcCTCCAGAGTTATCGACCTCGGCCAATAAGGAGTCAGTTTGTTAAATGGGCGCAAAGTGGTCTCCCCATGGACAGAAGGGTCTTCCTCACATTTCCGAGGAAAGTTAACGTAGCGGTTGAATTAGTAACCAAGCTAAATGAACTTTAGCTAACAAATTACAACCCAGCGGCGAGACAAACTTAGCGCGAGCTCCGCTCACTTGTCTCATCCATCTCGTGTCGCGAGCAATGCTGAAGAAACTGGCCGCCACTTCTTGAACTGAGCTCGGACTGATAGCTAGCGAACACTCGCTAGTTCTGCCTTTTACCGATAATGTCTAGTCTTCCACAAAAAAACTTAAAGGAGCAGCTGGCGAGGCACAGCAATGCTGCTCAGAGCAAGTTGTCTCTGCCTAAACCCAAAGCGGGATTGAGCTGTAAATGTATCGGCATCACAGAGCTCAGTATGAAGAAGTCGGTCCGGACAGCGGCGAGTAAGGTGAGCGGAGATCGAGGGAAGGCAGAGGCCACGGCTACCGCTGGCACCGGAAAGCCTGCAGCTAAGACCAGCACCACTGCACCTCTGTCTAAGGTGAAAAGCAATGATGATCTTTTAGCAGCTATGGCCGGAGGGAATCCTGCATCAAGTAATGCCGTCAGCAGGACCAAGAAGACTGCCTCCATTGGGACTAATGCTTGCAGCCTAGACAGCAAGCCAAAGACAACTTCAGGTACTTCATCCAAGCGTACAAACTCTTCCATTTCCAAGGAGCCAAATTCGTCACGAGACCGTCTCCGGACATCCAGGACCTCAGCCAATAAGAAGCAGTTGGTATCAGGGACCGCAGCGGGGGATGTAGCCTCAGGGAAGCGCTCTCGCAGCCAGATCCTGGCGGAGTCTGACGGCCGCATGAGCAAGTCTAAATCAGACGGCCAGATCAGTGATAAGGTGGCTCTGGAGACCAAAGTGAAAGACCTGTTGGGTTTGGCTAAAAGCAAAGATGTGGAGATCCTCCACCTTCGCAGTGAGCTGCGGGACATGAGGGCCCAGCTTGGCTTGGGAGGGAAGGAAGCAGCACAACAGGAAGAAGCTCCggaggtggaggaagaggaggaggaggaggaggaggaagaggagaagccCCAGGTTTCAGCCATCACAGCGGCTGACGTGGAGTCCACGCTGATTCTCTTACAAGAGCAGAACCACGCCATCAGGGAGGAGCTCAACCTGCTCAAGAGTGAGAACCGAATGCTAAAAGACCGGCTCAACGCGCTGGGCTTCTCTCTGGAGCAGAGGCTCGATGCCTCTGACAAGCCGTTCACCTACGCCTCCCTGAGCCCGGACCTGACAGCAGGTAGCGGGCAGAGTGATGGTGGGGGAACCGGTACGCTGACGTCCTCGGTGGAAGGCTCTGCCCCGGGATCCTTGGAGGATCTGCTCACAGGACACCAGCACGGAGGCTCAGCAGACAACCTGGACAGTGAATCCAGCGAGGTCTACCAGGCCGTCACCTCCAGCGACGATGCTCTGGACGCCCCTTCCGGAGCTTCCTCGTCATCTGAATCGGAGTGCGCCCCCAGCAGGGAGCGCTCGCGGCGGGGCAGCAGCGGCAACGCCAGCGAGGTGTCAGTGGCCTGTCTGACGGAGCGCATCCACCAGATGGAGGAGAACCAGCACAGCACCGCAGAGGAGCTCCAGGCCACGCTACAGGAGCTGGCCGACCTGCAGCAAATCACCCAGGAGCTGAACGGAGAGAACGAGCGGCTGGGCGAAGAGAAGGTGATCCTCATGGACTCCCTGTGCCAGCAGAGCGACAAGCTGGAGCTGTACGGGCGACAGATTGAGTATCTGCGCTCTCTGCTGGACGATCATCACATATCGTACGGACTAGAGGAGGACATCAAGAGTGGCCGCTACTTGGAGCTGGAGCAGCGCTACGGAGAACTGGCAGACAACGCCCGCTTTGAGAGAGAACAGCTGCTGGGGGTTCAACAACACCTGTCCAACACACTGAAGATGGCCGAGCAGGACAACGCCGAGGCCCAAGAGATGATCGGAGCGCTAAAAGAGAGGAACCACCAGATGGAGCGCATCATGGAGTCCGAAAGACAGGGTCGAGCTGCCATGGGGGCCACACTTGAGGAGTACAAGGCAGCGGTGAGCAGTGACCAGGCGGAGCTGAGCCGCTGCAGAGCCCAGCTAGACCAGGAGAGGCACAGGGTTGCCGAGCTGTACTCTCTTCACACCGCAGGGGACAAAAACGACATCTGCCAACTGCTGGAAGGAGTGCATCAGGGGAAAGAAGAGGCGGAGGCCAAGGCGGCCAAGTTGCAGAAGGAGCTGGAACAAGCTCACAGTGAGCTCACTCGACTGCAGGAGTCTTTCAGTAAGCTAGACAGGGAGTACAGAGACTTCCAGGAGCAGGTGCGGCAGCAGATGGCCGAGCAGGAGCGCGTGCTGGAGAAGCAGCGTGCAGAGCTGCAGGAGAAAGACACCGAGATCGCAGACATGAAGGAAACCATCTTCGAGCTGGAGGATGAGGTGGAGCAGCACCGAGCTCTCAAACTCCACGACAACCTCATCATCACAGACCTGGAGAACTCTCTGAAGAAGCTGCAGGACCAGAAGCACGACATGGAGAGAGAGATTAAGATTCTTCACCGCAGGCTGAGGgagGAGTCAATGGAGTGGCGTCAGTTCCAGGCCGATCTGCAGACAGCTGTTGTCATTGCTAATGACATCAAGTCCGAAGCACAGGAGGAGATTGGGGACCTGCGGCGCCGGCTGCAGGAAACCCAGGAGAAGAACGAGAAGCTGTGCAAGGAGCTGGACGAGGTCAAGAGCCGCAAGCAGGATGAGGAGAGAGGCAGAGTGTATAACTACATGAATGCAGTGGAGAGGGACCTTGCTGCTCTCAGACAGGGGATGGGTCTCAGCCGGCGATCCTCCACCTCCTCAGAGCCCTCGCCCACCGTCAAAACACTCATCAAAAGCTTCGACAGTCCACCTTCCAATGGCAGTGCCTCTGTGACTCCAACAGCCTCGGCTGCTCCACTGCCACGCACCCCCCTCAGCCCCAGTCCCATGAAGACGCCGCCAGCAGCTGCCGTTTCACCCATACAGagaCACTCCATATCTGGCTCGATGTCAGCAGCTAAGCCGCTCTCCTCCCTGAGTGATAAGAGGCCCAGCTACACAGACATCACCATGCCAGCTGATCACCTTCTCAGGGGAACCTCGGCTAGCCGGCCTGCGGCTGTCCTCCAGAGGGTCTCCAACATGGACTCCACCAAGGCAATCTCAGTGTCCCGCCGGAGCAGTGAGGAGATAAAGAGGGACATGTCTGCCCCAGACGCCTCCTCAACTTCCCTGATGGCTATGAGTGCTGCTTCCTCCCCGCTctccctgtcctcctcctcccccaccgCCTCCGTCACCCCCACAACACGCAGCCGTCTAAGagaagagagaaaggacCCGCTGTCAGCACTGGCTAGAGAGTATGGAGGCTCCAAGAGAAATGCTTTGCTAAAGTGGTGCCAGAAGAAGACTGAGGGTTATCAGAACATTGATATCACAAACTTCAGCAGCAGCTGGAATGATGGCCTGGCCTTCTGCGCTGTGCTTCACACCTACCTGCCTGCACACATCCCCTACCAGGAGCTCACCAGCCAGGAGAAGCGAAGAAACTTCACCTTAGCTTTCCAGGCTGCAGAGAGCGTGGGCATCAAATGCACTTTGgATATAAATGAGATGGTGCACACAGAGAGGCCAGACTGGCAAAGTGTCATGACTTATGTCACAGCCATATACAAGTACTTTGAGACCTGACTCCATCTTCTCAGCCACTCTGCTCCTGCAGCACAATCAGATCCACGCAAGCCCTCCCGAGCACCCAGCAACCTCTCAACCCCACGGGTCGCTGATATACCTCATtgaccccctccccccttcaCCACAGAAACACCCAGTCACGCTGCATTTCGGCCCTCAGTATTTAACAACGCTAAAGGCAGAACAGAACCTCACTGGACTAACCCATTGCTACTCCATCCTTCCACTGCAGCGTAGAAGGTGCTTTGAGTAGAGTTGTAGTCTAAGGGCTTGCCTGTACTGTTACACTAGTAAGCCATGAAAAGCAACTGTGGCCAAAGCTTAGTGAACCAAGTATGATCTGACCAGCGGTGGACTCCCGAAGATCATCTTTGCCTTCAGTTCACGTCTGAAGGagcagtatgaaaaaaaaaatactccgtGTCTCAGTGCCTTCTACCTGGCTTTACTTGGCAGATAATATTCCTTCACCGTTAACCCAGTTTCCAGGGCTTTTAAAGGGGGAATTCCTGCTAATCTGACTTTCAGCGTGCTACTTTGCAAGAGGAGTGATTTTCATAAACAGtcccaatgtttttttcttttgttggtCGTGAATATTGTGTGGAAGCTTCTACAACAAAGCAAAAGTCAGTGTTGTTGGAATTCCCCCCACAACCCTAAAAATTCCCTTTTGAAAAGAAATTCAGACGGACACAGCCTTTTTTGCACCAAGTCTTCCAGACGTTACAGTTTGATACAGATTCCTCTCTTTCAATGGATAAAGTGCCTGTGTGAATTTTGAAGCAGGAGACCAGGATATGAGCTCCTTCTACAGAGGCAGTGTCTTTTCACTACAGTTTGTGAAGCTGGAAGTTTAGAGGAGTTGTTGCCAAATATGTTTCAGAGCCTTTTGATTGTCCATTTCTGACTTACTGGTCTTCAGGACAGAGTGATGCTGCAGACAGCTACTACAACAGCATTGGATCATCATGCCTGACTGAAATATGCTACATTCTACAACACTACTACACATTTTATTAAGCAGCACTAACACACTCTTATGATGGTTTTTCACTAAAAGATTCATGAAGGTTGACTAATGTTCAGTTGATGTGTATGGAGTTGAACGCTAATGTGCGTGTTTGCATTTTGTAGGCCTGCATTTGCCATCTTGCACTTCGACTTCTTTCATTAGGCAAATACAGCACACGGCATAATTTAATCCTAACCAAAATATGAGTAGTATTTAGTCTTTAGATATGTTTTGATTGACATTTAAGTTTTGTTTAGATCAGAGAGCCTCAAACGTTATCAGCCTGATGGTCTAATTAGAAAAGTAGTCTCTCACCATGGCCTTCATGTTGGGGAAATGTGCTCTAGTTTTGGAAACTAGCAGAAATAGATTCATAGGTAAAGACGCACTTTTTAAGGTCAGGTCAGCGTCTCATTAAAGACGTTTTGAGAAATACTCTTCACTGTTTTGCAAACAGAtcagaagattgataccatttTAAGAAATGCgattggtatcaatcttctcatccaaacactcggcaagaaagcaaacaagtgcatttcccaaaacgtcaaactattcctttaacaacaGCAAACCTTGCAAAACCACGATATTGAGCACAAAATATGCACAAGTGATCGGACAAGTCATTGTGCCACTGACTTGTTTGTGTTGATACTAATGCTGTTAGACAGGTAGTTTTTGAAATTCCTAGTACGACTAACCGTCACTATAGAGATACGTTGTGGCACACAGTCCTTTAGTTTGTGATTTCAGTCAGCAGCATTAATGTTTACCTTTTTAAGTCTCTCTATTTAGTATTTATAGCAGTATAACtttaataaatggtttataacaCTGTATTGTAGTTGTAAGCAGCTTTAAGGACATGTTTAGAAGTGTAGTGTTAGTCAGCaattagaaataaaaataagactTCTTTTATATTATTACAACCCTGTCACTATATTTCCATTCATTATCTGTTAAAACAGCAGCCTCCACTTACGGGTGTCCACAGGAGGAGTTAATGTTGtggacaaatacatttaataaacacttaaataggtttacaactacattatagtgaattataaaccatttattaaatgtGTACTTGCTGTCTTAAAATGCTAAATAGGGTGatataaagtaaagtgttagcATGTAATGCGGTCTTGACTGCTGTGTGTTTTATCGTGCCTCAACATACCAAGTTCACTGTATTTATTCGCATGGTTTCCAATCATTatagtgagtgtttgtgtgtcttaaAGTGTATAGGAATCTattacacatacagtaggtagcTGCACTGAGATAAGCTTTTTGTATTCCGCACTAATTTCCTGCCTTAACAATTGAGCTGCGGCTTCTGCAAGCGAAACATTTGAAACCGCGGTTATCTTTGCCCGCCAGGCACACGTCGTCGCAGCGTAGAAACCTTTTCTAAAATAAGGTCCTTCTAGTTTGTGCCTCTTGAGCAACACTGCTAGTGAGCGATGGCCATAAACCGTGTCTGGTGAAGGTGGCTGCACACCGTTTTGATTTGGAACAGATGACGCTGCCAGCTGGCATCAATAGCTACATCAGAAACAACATTTCTGTCTCGATTTAGAAGCACATCCTGCCGTGCCGTTTGCCAAGCCACATCATTACAATGTGTCCAGCTGCATTAGACGAGACATTCAGTGATCTAATGTTAGCACAAGAGCCTGCAACAatgacagttttctttttttttgtgtgcaagagagagagagagagagtgtgagtgagttATTTAATGACATTTGAAAGAATTGGCTCTCTAGTTGATAGGGGTTTGTGATGCCATGATGCTGAGGATTATCAACCAACCAACCGTTTCTCTGTGTTCTGCCTGGTTCCGCCGCTGGCCCACGGGTTTTATTGCTCCCGACAGGGACTGTCTAGAGAGCTACAGAAAGATTTGAAGCCTCTCcatcctggaagtggaatgtGTTTTTGATCACGCTTTAGTGATCCTGGGACTTTACGAGGTCCAGCGTGTGCTGACGGGGAGTGATTGATGAACATGAGGAGAGACCAAAAACGGCTGGCAAAAGCTAGGAAGCACATTCCACCTCCTAACGATACATCCGCGAGGGACACGTTACACTGTTTACGGCTGGAGATTATGCCCTTTTAAGTGTGTAGCTTTACCACAACGAGCAAAGCTAATGTGAACAGTGCATTATGTCTTTAATGGGTCCACTTCATCACAATACATTCATTTTCTTTGTGTGTATTTACTTGAAAATGCTCTGAGAATTCCACTGaacctacttttttttgtttccatgttgccttttatttttacactacatgccacatttatttttttccttatcACACTACATGCAGTGCTGAAATGTTCCCTTGGCAAagttaaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatctaaGCTACAGTATTAAGTGCACACTACGATGATAATCAGTTGTAAATAAAAGCCAATTGAAACAG

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0005819 spindle cellular_component
GO:0005921 gap junction cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80413 lncRNA downstream 110425 7610429 ~ 7617135 (-) False G59875
TU80414 lncRNA downstream 112666 7610429 ~ 7614894 (-) True G59875
TU80418 lncRNA downstream 150985 7576229 ~ 7576575 (-) True G59878
TU80415 lncRNA downstream 152030 7574720 ~ 7575530 (-) True G59876
TU80390 lncRNA downstream 233381 7493888 ~ 7494179 (-) True G59855
TU80515 lncRNA upstream 67854 7827141 ~ 7877205 (-) True G59951
TU80534 lncRNA upstream 142944 7902231 ~ 7902539 (-) True G59970
TU80536 lncRNA upstream 144406 7903693 ~ 7903912 (-) True G59972
TU80643 lncRNA upstream 411098 8170385 ~ 8170606 (-) True G60064
TU80651 lncRNA upstream 441749 8201036 ~ 8201375 (-) True G60072
XM_039803844.1 mRNA downstream 500 7710144 ~ 7727060 (-) True adora2aa
XM_039803053.1 mRNA downstream 21064 7702359 ~ 7706496 (-) True LOC120560484
XM_039804485.1 mRNA downstream 54009 7663796 ~ 7673551 (-) False upb1
XM_039804484.1 mRNA downstream 54009 7663796 ~ 7673551 (-) True upb1
XM_039803196.1 mRNA downstream 177359 7528579 ~ 7550201 (-) True lrp13
XM_039803849.1 mRNA upstream 7519 7766806 ~ 7820472 (-) True si:dkey-91m11.5
XM_039803851.1 mRNA upstream 7519 7766806 ~ 7776826 (-) False si:dkey-91m11.5
XM_039803054.1 mRNA upstream 118112 7877399 ~ 7887425 (-) True anapc7
XM_039803273.1 mRNA upstream 155570 7914857 ~ 7924566 (-) True pptc7a
XM_039803272.1 mRNA upstream 165646 7924933 ~ 7930884 (-) True ppp1cc
TU80421 other downstream 143041 7584086 ~ 7584519 (-) True G59881
unassigned_transcript_243 other downstream 216269 7511221 ~ 7511291 (-) True trnag-ccc
TU80230 other downstream 730704 6991203 ~ 6996856 (-) True G59739
TU80011 other downstream 1203886 6522759 ~ 6523674 (-) True G59563
TU79961 other downstream 1300749 6426250 ~ 6426811 (-) False G59521
TU80531 other upstream 120137 7879424 ~ 7887403 (-) False anapc7
TU80745 other upstream 641735 8401022 ~ 8402566 (-) True G60145
TU81433 other upstream 3429855 11189142 ~ 11189741 (-) True G60715
TU82089 other upstream 5829752 13589039 ~ 13589332 (-) True G61264
unassigned_transcript_252 other upstream 7179688 14938975 ~ 14939047 (-) True trnaa-agc_14

Expression Profile