RNA id: TU80483


Basic Information

Item Value
RNA id TU80483
length 2380
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G59931
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 7920777 ~ 7924556 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGAAAAGTACTGGCACTGGCACAGACAGAGATCTGTTCCCAAAACATGCAGTCACTGGTGTTATACGTTGGCGCATGCTTTGTTGTTGGGAAGCAGCGTGAAGGAGGAAAGGGAGTCTGAAAGTGTCCTGCATGGAGCAAGTCAGGACAAGAGCCTTTCCCAGGCCTTCTTAATGCGATCTGGCGGTTCTGACTCACGATGAAAAAATCTTCCATCCAGCCACCACTTAAAGTGAACGGGCGGAAGAAACAAACCTAACCCTCGACAGTGCGCTCCGATCCAAACCACATGGAAAACGTACCGTTTCCTTGGCACGCACAGTGTGCCCTCCACAACTTTACTGTCCGGCGGAGTGCATGGCATGGATCTTAATTAGTTTAGTGAGGTTTGGAACAAGGTTAGAGGCGCGGAGCAGGAAACCTAGGGAGCATCACGGTCCGCAGTCCCGCGATAACACGTTTAATACAAAACAGGTCGGAAAAGGAGGAGACCTTGGCAGGCTTTTTGTTCTCATTAAACTAAGATAGGATCATCACAACAACTGTAGAGGAAAGAACAGGGCGATGaccagtagggctgggtattagacatgcaccgattacaactttctaggccgattccgattttctttgagttaggccagccgataacGATTTCATTtcttctaaccactttacagcacacacaaatatttattttctatcttcacatgggtctggctgctcccggattttacAAGCAAGCATAATGGCGGcacattcagaatacaatctcatattttacgaagatagttcaccgtaacgtgtttctgaaaacatgtaAAGCGAGAAacaggccatgcagttgctgaatctatcttcatttcagatcgacaaaggtcagtttaaaagatcttCGTCAAATTTTGAGAGGTTGTTCGTCACGCTAACATAAGTACACTGATTcactagtcaagggctagcactccaccaatcagattggtcatcgagtccgactgcccgccctccgacccagcaagtcaggtcggccaaaatgaaggccgacggctcctccgactgacgacgccACGGAacgcaccgaacagactcgagtcaccgacctcgccagactatcgggttggtgtgtcagggccttatcgttaagacagccaatcacaatcattactagatcttggtagaagcatgctgcgtgctcactgacgctgatgagatttactccttaggtattgaagttgggtattgaatgacgaggcattttttttttccttactcaatactttagaggcaattcggtcggtgcctaaaaaagtattgaattctgTCCCCGTCCCGAATGACCACGGCCACGCGGAATCTGCAGACACAGAATTCTCcacagattttaaacaaaaaataaagcaaaatatCCAGACGTCCTGGTACCACAGATGGTGGACATGGCCTGAGCATATTGTTGCTTTTCCCCAGGCACTGGTTATGAACAGGAATATTCATTCACATAAGCACAGAAGGTATTCTACAGGAGAACGCATTGATAGGGTCCCGTCGACTTTAATGTGTATTATGAACACTGGGATCCTGCGTTTCCGGCAGCTTTACTCACCCAGCAGGGGCACTTTGTTCTGCAGCAGCTCGTAGTAGCTGCTGGTGAGGACTCCCACTGGGTTGCTGGGGACGAAGCGTCCTTCCTTCACCAGCCTCTCGCACGTCTTCATCAGTGTGCCTGAAAACTGCGATGGGTCTACGCCATAGTCTCGCCAGCCACCTACTCCATCTGCTACCCCAAAACATCAGCGGATCTGTGTCGGGCGATGAAGCACGCGTCGTCCCCATAGCACATCCCTTTCTTCAGTATGCCTTTGCGAAAGTCCTTGCCGAAGCCACAGCTCGCCGTCACCAGGCTGTAGTCGCGGCCGTCTGTCTGAGAAAGTCCGCCGATGACAGCTCTGGCCACAAGTCTACCGTACGACAGGACGGACAACATCACCTACACACCAGCTCCTACCAAAACAAACCGGCCAAGCTAGCAACCCTGCTAGCTTAGCGGCGATGTCCAATGTTGACTTGCTAATGTGAATGTGAGGCTGAGCTAGCCAGACACTGCCGCCGCCGCCGACAACAGCCGCCACGCACGCATACGCAATGATGTAAGTACAGACTCGAGGAGCTTTGTTCTTGCGCCGTGATATctgggaagaaaagaaagaaaaaaaatcaccgAAAAAAGTCGCCTCTTCTACTCCAAAAGACCCGTAAGTGCTGGTTCTCCGCGGCCATGGTGTCAGTCCTGTCTTTGAGACTACTAGCGATATATAACACAAAGTGTGAACCGGTTGCCCCGTGGCCTCACACACTGCGCTCTGCTAGCAAAGTCTTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80492 lncRNA upstream 42406 7874814 ~ 7878371 (+) False atp2a2a
TU80491 lncRNA upstream 42406 7877168 ~ 7878371 (+) False atp2a2a
TU80365 lncRNA upstream 273628 7646705 ~ 7647149 (+) True G59839
TU80363 lncRNA upstream 284723 7635595 ~ 7636054 (+) True G59837
TU80343 lncRNA upstream 289536 7630506 ~ 7631241 (+) True G59826
TU80665 lncRNA downstream 302336 8226892 ~ 8227173 (+) True G60082
TU80669 lncRNA downstream 307448 8232004 ~ 8236195 (+) False G60084
TU80667 lncRNA downstream 311003 8235559 ~ 8236527 (+) False G60084
TU80668 lncRNA downstream 311003 8235559 ~ 8238788 (+) True G60084
TU80663 lncRNA downstream 377702 8302258 ~ 8313113 (+) True G60080
XM_039803276.1 mRNA upstream 7257 7904789 ~ 7913520 (+) True rad9b
XM_039803274.1 mRNA upstream 16183 7898563 ~ 7904594 (+) True LOC120560606
XM_039803275.1 mRNA upstream 20253 7888678 ~ 7900524 (+) True LOC120560607
XM_039803270.1 mRNA upstream 43653 7847671 ~ 7877124 (+) True atp2a2a
XM_039803271.1 mRNA upstream 43653 7847685 ~ 7877124 (+) False atp2a2a
XM_039803965.1 mRNA downstream 22696 7947252 ~ 8051340 (+) True cux2b
XM_039803966.1 mRNA downstream 23875 7948431 ~ 8051340 (+) False cux2b
XM_039803082.1 mRNA downstream 130809 8055365 ~ 8078168 (+) True mtmr3
XM_039803083.1 mRNA downstream 153746 8078302 ~ 8083374 (+) True LOC120560501
XM_039803058.1 mRNA downstream 248004 8172560 ~ 8204063 (+) True bicdl1
XR_005639609.1 other upstream 221526 7699133 ~ 7699251 (+) True LOC120561497
XR_005639608.1 other upstream 222732 7697927 ~ 7698045 (+) True LOC120561496
XR_005639610.1 other upstream 227568 7693091 ~ 7693209 (+) True LOC120561498
XR_005639604.1 other upstream 229985 7690674 ~ 7690792 (+) True LOC120561492
XR_005639603.1 other upstream 236014 7684645 ~ 7684763 (+) True LOC120561481
TU80548 other downstream 103636 8028192 ~ 8035361 (+) False cux2b
XR_005639399.1 other downstream 506981 8431537 ~ 8434672 (+) False LOC120560007
XR_005639400.1 other downstream 506981 8431537 ~ 8434666 (+) True LOC120560007
unassigned_transcript_244 other downstream 519898 8444454 ~ 8444525 (+) True trnaw-cca_2
unassigned_transcript_245 other downstream 521062 8445618 ~ 8445689 (+) True trnaw-cca_3

Expression Profile