RNA id: TU80651


Basic Information

Item Value
RNA id TU80651
length 340
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G60072
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8201036 ~ 8201375 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCTATTCAGAGACATGATGTCTATTTTACACTTGGCCAGCTCCATCTCCACTGCTTTCTTCCTGCAGGACGCACAGACAGAGCAACTAGTGACATCCTACTATGGTCATGAATGTAAAATAACTCTTTAAAGGAAGAGTTCGTTATTTTGGTAAATACGCTTATTCAAAGGAGAGTTATTAACCAGGATGTTGCTGGGAAGTTTTCTATGTTGTTTGAGCGATGCAGGCTAAGGGGTTGCAGTGATGCAAATGTGTATGCTGAGTCTTTTAACAGCCAATGTTTAGCAATTTTGGATGAAGTGGCTCCTATGAAATCAAACATTGTCTCTCTTAAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80643 lncRNA downstream 30430 8170385 ~ 8170606 (-) True G60064
TU80536 lncRNA downstream 297124 7903693 ~ 7903912 (-) True G59972
TU80534 lncRNA downstream 298497 7902231 ~ 7902539 (-) True G59970
TU80515 lncRNA downstream 323831 7827141 ~ 7877205 (-) True G59951
TU80467 lncRNA downstream 461460 7727777 ~ 7739576 (-) False specc1la
TU80652 lncRNA upstream 118 8201493 ~ 8201743 (-) True G60073
TU80730 lncRNA upstream 97802 8299177 ~ 8301619 (-) True G60133
XR_005639527.1 lncRNA upstream 161385 8362760 ~ 8369854 (-) True LOC120560869
TU80738 lncRNA upstream 170891 8372266 ~ 8386564 (-) True G60140
TU80746 lncRNA upstream 209528 8410903 ~ 8411138 (-) True G60146
XM_039803958.1 mRNA downstream 39779 8089036 ~ 8161257 (-) False LOC120561008
XM_039803059.1 mRNA upstream 12571 8213946 ~ 8234996 (-) True rab35b
XM_039803060.1 mRNA upstream 14922 8216297 ~ 8235009 (-) False rab35b
XM_039802741.1 mRNA upstream 34184 8235559 ~ 8272303 (-) True gcn1
XM_039802743.1 mRNA upstream 73546 8274921 ~ 8281269 (-) True vamp5
XM_039802742.1 mRNA upstream 73546 8274921 ~ 8281262 (-) False vamp5
TU80531 other downstream 313633 7879424 ~ 7887403 (-) False anapc7
TU80421 other downstream 616517 7584086 ~ 7584519 (-) True G59881
unassigned_transcript_243 other downstream 689745 7511221 ~ 7511291 (-) True trnag-ccc
TU80230 other downstream 1204180 6991203 ~ 6996856 (-) True G59739
TU80011 other downstream 1677362 6522759 ~ 6523674 (-) True G59563
TU80745 other upstream 199647 8401022 ~ 8402566 (-) True G60145
TU81433 other upstream 2987767 11189142 ~ 11189741 (-) True G60715
TU82089 other upstream 5387664 13589039 ~ 13589332 (-) True G61264
unassigned_transcript_252 other upstream 6737600 14938975 ~ 14939047 (-) True trnaa-agc_14
unassigned_transcript_253 other upstream 6743121 14944496 ~ 14944568 (-) True trnaa-agc_15

Expression Profile