RNA id: XM_039802097.1


Basic Information

Item Value
RNA id XM_039802097.1
length 1873
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC120560006
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8423189 ~ 8427745 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggcgaggcgcagttcatctcgaacgagcctactgTCTATCACTCGGGGTAGAGTTTGAACAAAGTTTTAAAGCAATGAAACGTAAACAGACCCAAAAAACACTATTCAGTGTTTTAAAAAGTCCGTCCCTGAAGCTACTGCCGCGCGGGGTGACACTGCAGCTGCCGCAGATCATGACGACCCGATTACCGTTACAGAAAACCAGCCCGAAAATCCAACCGCAACGTTACTGTTACCTGGTTGTGTGCTCTGCAGTGCAACAAAATCAACCACCATCCTTACTGAAAAAGGACTATCCATGTCTGAGGAGTGGGTGGACTTTAAGATCCAGTCATCAAGTGCAAACAGATCCACAGCTCTGTCCTCTTGGAGGAACAAAATCAGACGACATGAGACATCAAGGGCACATGAAATAGCCCAGGAGCTCACTGAAAAGGGTAAGCAGGATGTACTTGGAACTTTGGTGAAAACTATGTCAGAGACTGTGTTGGCTGAGACGGATGCTGTATTCAGAACAGCATACTACCTCGCAAAGATGAACCGACCTTTCACTGACCACGACAATCTTATTGAGCTTTAGAAACAAAATGGTGTTAACATGGGCACTAGTCTCCACTCAAGGTACAGTTCCACAAAAATTGTGGAACACCTAGCAAAAGagatgcagaaaaaaaatagttaacAGTATTGTGTCATCTCCAAGCAAATTGTCTGTTCTCATTGACGAGGCTACATCTCTCATCCACAAGTCTGCCATGACTGAACTTTTGGTTGAGCTGGAGAGCCAAAGGGCAGAGGGTATAGAAGAAGCTCTACTTAACTGTCTAGACACTGCAGGCTTCAGTGAAGAgtgggttaaaaaaaattggTTCTCATTTCTTTCTGATGGAGCCAGTGTCATGTTAGGCAAGAACTCTGGTGTGGCAACCAGGCTTACTGCAAGATACCCTAACCTCTTCAAATGGCACTGCATGAACCACCGTTTGGAATTGGCTGTATCTGATGTTGTGGATGAGGTTCAGGCAGTGAATCACTTCAAATCCTTCCTGGAGAAGATCCACAACCTGTACAGTCAGTCTAATAAAAATTCACGGGAGCTTCTGGAAGCAGCGCAAGAAGTGGGCTCACAAGTCCTCAAAATTGGCAGAGTTTTATCTACGCAATGGGTGGCCAGCAGCTTCCGTTCTGTAAAGGCTGTGTGGAGATCCTATGAAGTACTCAacagacactttgaaaatgctGCAGGAGACGAAACAAGAAACAGCAAAGAGAGACAAACTTACAGAGGCCTGGCACATCGTATGCAAAGCAAGGAATTTCTGTGTGACCTTGGACTCATGTATGATGCACTGTCTGAGCTTGCAAACCTGTCCCAGCAACTCCAGGCCCATTCAATCACACTCTTGAGAGCAGACCATCTTCTGAAGCGCACCATCAGAGTGCTGGCATCATTCAAAGACACCCCAGGAGAGAAATCAAAGGAGGCACTGGCAGCACAGGCTTTGGGACAATTTGGATCAGTTCCACTCCACTCAAATGCAAAGCTCACACCAATCAATGCAAAGCAGTTCCTACAAAGTCTGATTAACAACATGGAGAAGCGGCTCTCATTTGAAGCGTAGGACGTGAAACCAGTTTGGTGAAGAGGATTTCAGACTGTGGCGCAATGGTAGCGCGTCTCACTCCAGATCAGAAGGTTGCGTGTTCAAATCACGTCAGGGtcaatgtttctgtttctctaGCTCCATTGGAAAATGGTCAGAATAGGGTGATATTTTGATCACATGCTGGATACTTTATCACATCAGAACAGAAAAATGGTCCCTGAATTCCTGTACAATGAAATGAATGCACTAGCAGTTAAAATCACAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80747 lncRNA upstream 5862 8417642 ~ 8417850 (+) True G60147
TU80713 lncRNA upstream 51161 8372266 ~ 8372551 (+) True G60120
TU80698 lncRNA upstream 96759 8325053 ~ 8326953 (+) True G60109
TU80663 lncRNA upstream 110599 8302258 ~ 8313113 (+) True G60080
TU80668 lncRNA upstream 184924 8235559 ~ 8238788 (+) True G60084
XR_005639402.1 lncRNA downstream 1208 8428953 ~ 8431230 (+) True LOC120560009
XR_005639401.1 lncRNA downstream 6996 8434741 ~ 8437598 (+) True LOC120560008
TU80762 lncRNA downstream 9202 8436947 ~ 8437592 (+) False LOC120560008
TU80778 lncRNA downstream 50834 8478579 ~ 8478887 (+) True G60174
TU80781 lncRNA downstream 55150 8482895 ~ 8483122 (+) True G60177
XM_039803747.1 mRNA upstream 21143 8331385 ~ 8402569 (+) True LOC120560868
XM_039803746.1 mRNA upstream 21143 8397481 ~ 8402569 (+) False LOC120560868
XM_039803748.1 mRNA upstream 21143 8399670 ~ 8402569 (+) False LOC120560868
XM_039803745.1 mRNA upstream 34594 8387822 ~ 8389118 (+) True LOC120560867
XM_039803057.1 mRNA upstream 219526 8173021 ~ 8204186 (+) False bicdl1
XM_039802098.1 mRNA downstream 5207 8432952 ~ 8434672 (+) False LOC120560007
XM_039803055.1 mRNA downstream 37426 8465171 ~ 8482178 (+) True LOC120560486
XM_039803061.1 mRNA downstream 382809 8810554 ~ 8836973 (+) True zgc:110329
XM_039802727.1 mRNA downstream 434225 8861970 ~ 8907724 (+) True slc4a5a
XM_039802728.1 mRNA downstream 434225 8861970 ~ 8907724 (+) False slc4a5a
TU80548 other upstream 388351 8028192 ~ 8035361 (+) False cux2b
XR_005639609.1 other upstream 724461 7699133 ~ 7699251 (+) True LOC120561497
XR_005639608.1 other upstream 725667 7697927 ~ 7698045 (+) True LOC120561496
XR_005639610.1 other upstream 730503 7693091 ~ 7693209 (+) True LOC120561498
XR_005639604.1 other upstream 732920 7690674 ~ 7690792 (+) True LOC120561492
XR_005639399.1 other downstream 3792 8431537 ~ 8434672 (+) False LOC120560007
XR_005639400.1 other downstream 3792 8431537 ~ 8434666 (+) True LOC120560007
unassigned_transcript_244 other downstream 16709 8444454 ~ 8444525 (+) True trnaw-cca_2
unassigned_transcript_245 other downstream 17873 8445618 ~ 8445689 (+) True trnaw-cca_3
unassigned_transcript_246 other downstream 19035 8446780 ~ 8446851 (+) True trnaw-cca_4

Expression Profile