RNA id: XR_005639401.1


Basic Information

Item Value
RNA id XR_005639401.1
length 2166
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id LOC120560008
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8434741 ~ 8437598 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCAGGGAACAGTTAATAAAAATACAGGAAGCAATAACAGTCCAAGAGGCGAACACTGCAATTGCAGAGGCAGCAGATAGTCTCAGCATTATAGGTTCCTTAAGACATGTTTCCAGCCTGAAGGAGAAGGACTCCCTTGTACAGTCAGCTGCAGACTTCTTCGTCAATGGAAGATTGGTGACTGCCCTGGACCAGTTTGCTGAGGGGTTAAAAACCCTTGGTTTACTGGAGGAGctgaggaaaaatccagcagTGTTCTACAACATGTTTGTCAGTGAGGAGATTCCACTACAGGCGAAGGGCCTATGCACTTTATTTGACGTGGACTTCTCTGTGCAGGGCAGCACCGGAGAGACCGAGAAAAACAGACAATATGCTTTTGGCGTGACTGGTTAATTGAAATTGAAGAAGGATAATGCAGTCCAGTCACCCTGGAGAAGGTATTGGAGTTTACAACTGGAGCCTCAACAGTGCCTCCGCTGGGATTTCCACACCGTCCACAAATTCAGTTCCTTCATGAGGGCAACAGAATCTTCCCAGAAGCAAATACTTGTGCTCTTCTACTCCGCCTGCCGCTGCACTCTTCCTATGAAGCCTTCAAACAATACATGATGGAGGGAATTTTGCAAGCTCCAACCTTTGGACTTGCATGATGTCACTGTGTGTAAAATTTGTTGATGGAAATTCAGTTTTCACTTGAGCTATATTTATGCTTAGAAGTTAGTTGATAGAATGCTGTGTTGAAGCAAGTCACAGGTTCAaatggtaattttttttttttctttttttttagatttagtaattttgtttattttgctttAGTAACAGTTAACTTCAGTTAATTCAATATTGAGTTTTTCAGTTAACTCaaatgtattgtgtatttttttatttttttttgctttctttcaaaaatatttttatatatttttgaagATCTAAATTGACATGATTTTCACAACAATGGCACACAAATGTGAATTAAATACAGCCTAAAGACCACCAATTACCTCATTTCCAGAATTAGGATATTGGCTCTGAAGTTGCCTCACATGTTGTTCTAGTTCACCATCATCTATTGCAGACAGCATACTTCTAACAGGTATACCCATCAACTTTGACTTCTTGTACAGAAATGATGAGAAGCATCCCAGTATTTCAGCAGTTTGTGCAATTGTATGGCCTTGCTTCAGCAGAAATTCAATGTGTTCTCTGGTAACATCACGGGCTGGTCGGCCTCTTCTCACTACAAAAAAGTGTTTAAGCAGCATTgtactgtttattttttgtatatatcAGCGTAGCAATTCACATGCATGCATTGGAATTGCGTATTGTTAATGAATAGGCAGGTTcagatggagttttttttttagactcagtaattctgttcattttacatgagttACAGTTCACTTAAGTTGATAGGTTATTCAATATTGAGTTTTTCAGTTAACTCaaatgtattgtgtattttttttatattttgaatgttttttaaaaatattttaatttttacaagACATTTATTGGGCTTATAGTTCATGGTTACTATGGTGACACTGTTGCGGTTGTCTAATGAAATAGATACTCCTTTATAAGCCTACTGTAAGGATTTATTGGGCTTCTAATTCAATGAATTTGATCAAATCACACATAACTGCCAATATGTTTGGCTTATGTAGATGTTGACGAATACAGAGTGAATACAGACAAGGCAAACAAAAAGTCAGGCTGGTTGTAGTTCCGTCAGAGCTGGAAGCTGCTACCTGACCAGAGGAGGTTTGAGGTAAAGGAGGATGACCTGAAGAGTCTGGACAGACACTGAAGGGACAGAAGTCAGTACAAGCAAATGTgatataataaactgtataacATGGTGAAAAATGAAACTCTTACTGCGGTTTGTTTATAAACAGTTTGTTCATTGTATCACATTCAGTTATACTGACTTCTGTCCCTCCAGCGTCTGTCAGACTCCTGGTCATCAACCTCAACAGCTTACCGTTGTAACCTGTCCCTATCATGACTCGGTCTCTGTTCTGATTGATTGATGTTAAGGTATAACAAGGTATTTAAGGTATTTTTGGCTGTTAAACCTCTCTCCTTAACTGTTAATCTAAAATCCCCATTCAAGCCAttaaacatttcatattttttcatacA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639402.1 lncRNA upstream 3511 8428953 ~ 8431230 (+) True LOC120560009
TU80748 lncRNA upstream 10998 8423189 ~ 8423743 (+) False LOC120560006
TU80747 lncRNA upstream 16891 8417642 ~ 8417850 (+) True G60147
TU80713 lncRNA upstream 62190 8372266 ~ 8372551 (+) True G60120
TU80698 lncRNA upstream 107788 8325053 ~ 8326953 (+) True G60109
TU80778 lncRNA downstream 40981 8478579 ~ 8478887 (+) True G60174
TU80781 lncRNA downstream 45297 8482895 ~ 8483122 (+) True G60177
TU80786 lncRNA downstream 153655 8591253 ~ 8591473 (+) True G60182
XR_005639469.1 lncRNA downstream 159944 8597542 ~ 8598388 (+) True LOC120560290
TU80794 lncRNA downstream 209623 8647221 ~ 8647449 (+) True G60189
XM_039802098.1 mRNA upstream 69 8432952 ~ 8434672 (+) False LOC120560007
XM_039802097.1 mRNA upstream 6996 8423712 ~ 8427745 (+) True LOC120560006
XM_039802096.1 mRNA upstream 6996 8423712 ~ 8427745 (+) False LOC120560006
XM_039803746.1 mRNA upstream 32172 8397481 ~ 8402569 (+) False LOC120560868
XM_039803748.1 mRNA upstream 32172 8399670 ~ 8402569 (+) False LOC120560868
XM_039803055.1 mRNA downstream 27573 8465171 ~ 8482178 (+) True LOC120560486
XM_039803061.1 mRNA downstream 372956 8810554 ~ 8836973 (+) True zgc:110329
XM_039802727.1 mRNA downstream 424372 8861970 ~ 8907724 (+) True slc4a5a
XM_039802728.1 mRNA downstream 424372 8861970 ~ 8907724 (+) False slc4a5a
XM_039802730.1 mRNA downstream 484685 8922283 ~ 8933253 (+) True zgc:113436
XR_005639399.1 other upstream 69 8431537 ~ 8434672 (+) False LOC120560007
XR_005639400.1 other upstream 75 8431537 ~ 8434666 (+) True LOC120560007
TU80548 other upstream 399380 8028192 ~ 8035361 (+) False cux2b
XR_005639609.1 other upstream 735490 7699133 ~ 7699251 (+) True LOC120561497
XR_005639608.1 other upstream 736696 7697927 ~ 7698045 (+) True LOC120561496
unassigned_transcript_244 other downstream 6856 8444454 ~ 8444525 (+) True trnaw-cca_2
unassigned_transcript_245 other downstream 8020 8445618 ~ 8445689 (+) True trnaw-cca_3
unassigned_transcript_246 other downstream 9182 8446780 ~ 8446851 (+) True trnaw-cca_4
unassigned_transcript_247 other downstream 10347 8447945 ~ 8448016 (+) True trnaw-cca_5
unassigned_transcript_248 other downstream 11546 8449144 ~ 8449215 (+) True trnaw-cca_6

Expression Profile