RNA id: TU80794


Basic Information

Item Value
RNA id TU80794
length 229
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G60189
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8647221 ~ 8647449 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTCACTCCACTCTTTAAATGCCTCTCACTTGCTCAGACAGCTGATGCTACATCATAATGGTTACTATGGATAGGTTATGTCATATTAGGTCTATCATTTGACGGGCTTGTTTGGGAATTCCAATTCAATATGATGTTCAAACCTTGCTCTGACAAATCACATCGAGATTCATTTCACTTTGACAAGctgagttaaaggtcccatgacatggttctctttggatgcttt

Function

GO:

id name namespace
GO:0031589 cell-substrate adhesion biological_process
GO:0007160 cell-matrix adhesion biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639469.1 lncRNA upstream 48833 8597542 ~ 8598388 (+) True LOC120560290
TU80786 lncRNA upstream 55748 8591253 ~ 8591473 (+) True G60182
TU80781 lncRNA upstream 164099 8482895 ~ 8483122 (+) True G60177
TU80778 lncRNA upstream 168334 8478579 ~ 8478887 (+) True G60174
XR_005639401.1 lncRNA upstream 209623 8434741 ~ 8437598 (+) True LOC120560008
TU80806 lncRNA downstream 84264 8731713 ~ 8731922 (+) True G60201
TU80828 lncRNA downstream 137204 8784653 ~ 8784920 (+) True G60223
TU80840 lncRNA downstream 186178 8833627 ~ 8856430 (+) True G60229
TU80844 lncRNA downstream 206824 8854273 ~ 8929828 (+) True G60232
TU80917 lncRNA downstream 318056 8965505 ~ 8989713 (+) True G60275
XM_039803055.1 mRNA upstream 165043 8465171 ~ 8482178 (+) True LOC120560486
XM_039802098.1 mRNA upstream 212549 8432952 ~ 8434672 (+) False LOC120560007
XM_039802097.1 mRNA upstream 219476 8423712 ~ 8427745 (+) True LOC120560006
XM_039802096.1 mRNA upstream 219476 8423712 ~ 8427745 (+) False LOC120560006
XM_039803748.1 mRNA upstream 244652 8399670 ~ 8402569 (+) False LOC120560868
XM_039803061.1 mRNA downstream 163105 8810554 ~ 8836973 (+) True zgc:110329
XM_039802727.1 mRNA downstream 214521 8861970 ~ 8907724 (+) True slc4a5a
XM_039802728.1 mRNA downstream 214521 8861970 ~ 8907724 (+) False slc4a5a
XM_039802730.1 mRNA downstream 274834 8922283 ~ 8933253 (+) True zgc:113436
XM_039803657.1 mRNA downstream 292380 8939829 ~ 8965106 (+) True LOC120560802
unassigned_transcript_250 other upstream 193351 8453799 ~ 8453870 (+) True trnaw-cca_8
unassigned_transcript_249 other upstream 195677 8451473 ~ 8451544 (+) True trnaw-cca_7
unassigned_transcript_248 other upstream 198006 8449144 ~ 8449215 (+) True trnaw-cca_6
unassigned_transcript_247 other upstream 199205 8447945 ~ 8448016 (+) True trnaw-cca_5
unassigned_transcript_246 other upstream 200370 8446780 ~ 8446851 (+) True trnaw-cca_4
unassigned_transcript_251 other downstream 565793 9213242 ~ 9213313 (+) True trnaq-cug_4
TU81099 other downstream 1279501 9926950 ~ 9953239 (+) False LOC120560959
XR_005639542.1 other downstream 1279600 9927049 ~ 9981054 (+) True LOC120560959
XR_005639543.1 other downstream 1279600 9927049 ~ 9981054 (+) False LOC120560959
TU81096 other downstream 1279658 9927107 ~ 9980989 (+) False LOC120560959

Expression Profile