RNA id: TU80912


Basic Information

Item Value
RNA id TU80912
length 1545
lncRNA type sense_over
GC content 0.40
exon number 1
gene id vps37ba
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8991441 ~ 9014903 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATAGAAATATTTGAGTGTCAGCTTCTTTTTATGTTATAGTACTAATAGAGTTATGTTAATGATAGCCAGGATAGACTGATTAACATGCGTAAAAGGAGGGCTTTGGTTGGTGTATCTCTTCTTCAATATGTGGTTGTGTCTCAAGAGTCCAGACCTGCCTGGTCCAAGATGGCTGACCTGCTGTACTCGGTCCATCTCAGAGCGAAAGTCATAAAGGGAGTTGAAGGAGAGGACCAGTGGCTGAACTATTGTAACAAATGACTAGGCCTGTTGAGCCTTGCCTGAAATGAAGGATCCTTTGTATAGCCATACAAgtacacttttttttgtggGTTCCTGTTGTAATGCAACACTCCTTTTTTATAATGTCCTTTGTCTTAAACTCATTTGGGATTGGAGATGATGCCAACAGTTCTTCTGGATCTCCTATGGTCCTGTTCAGTTTTCTGTCACACTGAGCACCAAAGATTTCCCACATCACTCTGTGttcaaacaattttttttttttttaatgtaggtGAAACATTTAGTGAGATGATCTACTATTGTTCCCAACATATCTGTTTGTGATGTTGAGCTCAAACACTCTGTAAACATGCAAGCGAGATTTCTTCAAAAGAAACTTGCGAGGTCAAACTGGCTTTTGGgaggaaagttttttttttttttttttttcggtgtGTTAGAAATTCACTTTTACTCCTCCCAAGTGCTGTAGCTGTGCACTGTTGAAGAGCCATGAGTGCCTACACTTGAAGTGACGTTGATCACGTCCTGCTGACTACTCCATGTTTCTCTATGCTCCTCTTCCCAACCCAAGAACAAACTGGCCAAGTATTTGGTCTTCTTCCCCCTCCTGCTACTGATTTCATGTTCCACCAGATGGTAGAAAAGAGTAGTGTGTGATTGTTAACTGTCAGACTGCTTTCTCACTAGAAACAGAAGGCCAGAATCGAGCGATACTGAACATGTGCCAGAGAGACAAGGGACGCCCTCAGGCTATACGCCTGGTGGTGCTTGTGCATCTCTTCCATTCTTCCTCTATTTGTATTGAGGTTTGCCTGGGGGTGAATTCAGAGatctgtgcatgtgttgttgctgggtttttttttgtttttagttgaTGAAAAAACAGGGCTCCAAAATGTTTTGTGTCATATCTTGGGGATAATACTTCACCTCAAGGCAAAGAAGTGGACCACAGAATGGACAAAGCATACTTGTCAGCAGGCAAAACTACAGAAATAGCTGAAGCTAAAACATCAACATCACCATGAGCCAGCATTTCTAACAACTAACAATAGATGATTCTTTTGTGCATGGCCTTTGCTCTTTGTGTCCAGTCTGAAGATTCctctttaatatatatatatattttttgggggTTGTGTTTAGCTGTTGAGCTGCTttttacgtttgaactgatccTCTGTCCATGGTTTTATATGTGGTTGGTGATATTTTCAATGTAATGTTGTAGATGATTACTTATAATGAATGTTTAAGTGGAATTTAATGCTATTTTCAAGTTCaataaatctcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80914 lncRNA upstream 22347 8989818 ~ 8991004 (+) True G60273
TU80913 lncRNA upstream 22761 8989818 ~ 8990590 (+) False G60273
TU80917 lncRNA upstream 23638 8965505 ~ 8989713 (+) True G60275
TU80844 lncRNA upstream 83523 8854273 ~ 8929828 (+) True G60232
TU80840 lncRNA upstream 156921 8833627 ~ 8856430 (+) True G60229
TU80925 lncRNA downstream 36248 9051143 ~ 9055635 (+) False ppp3cca
TU81020 lncRNA downstream 267917 9282812 ~ 9283636 (+) True G60363
TU81035 lncRNA downstream 449033 9463928 ~ 9464187 (+) True G60378
TU81044 lncRNA downstream 476115 9491010 ~ 9491626 (+) True G60387
TU81071 lncRNA downstream 756863 9771758 ~ 9772052 (+) True G60410
XM_039803062.1 mRNA upstream 23988 8972286 ~ 8989363 (+) True LOC120560490
XM_039803657.1 mRNA upstream 48245 8939829 ~ 8965106 (+) True LOC120560802
XM_039802730.1 mRNA upstream 80098 8922283 ~ 8933253 (+) True zgc:113436
XM_039802727.1 mRNA upstream 105627 8861970 ~ 8907724 (+) True slc4a5a
XM_039803659.1 mRNA downstream 2996 9017891 ~ 9055765 (+) True ppp3cca
XM_039803661.1 mRNA downstream 2996 9017891 ~ 9055765 (+) False ppp3cca
XM_039803662.1 mRNA downstream 2996 9017891 ~ 9055765 (+) False ppp3cca
XM_039803663.1 mRNA downstream 4228 9019123 ~ 9055765 (+) False ppp3cca
XM_039804518.1 mRNA downstream 118652 9133547 ~ 9134580 (+) True tcima
unassigned_transcript_250 other upstream 559481 8453799 ~ 8453870 (+) True trnaw-cca_8
unassigned_transcript_249 other upstream 561807 8451473 ~ 8451544 (+) True trnaw-cca_7
unassigned_transcript_248 other upstream 564136 8449144 ~ 8449215 (+) True trnaw-cca_6
unassigned_transcript_247 other upstream 565335 8447945 ~ 8448016 (+) True trnaw-cca_5
unassigned_transcript_246 other upstream 566500 8446780 ~ 8446851 (+) True trnaw-cca_4
unassigned_transcript_251 other downstream 198347 9213242 ~ 9213313 (+) True trnaq-cug_4
TU81099 other downstream 912055 9926950 ~ 9953239 (+) False LOC120560959
XR_005639542.1 other downstream 912154 9927049 ~ 9981054 (+) True LOC120560959
XR_005639543.1 other downstream 912154 9927049 ~ 9981054 (+) False LOC120560959
TU81096 other downstream 912212 9927107 ~ 9980989 (+) False LOC120560959

Expression Profile