RNA id: TU80917


Basic Information

Item Value
RNA id TU80917
length 537
lncRNA type sense_over
GC content 0.44
exon number 2
gene id G60275
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8965505 ~ 8989713 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgtttgggcatttccgcctttacTTACCAGGATAGcttagaaatgaaaggggagagagatggggaagacatgcaggaagttgctgcaggtcggattcgaaccctgggccTCTGTATAGAGGAATAAATCTCTACATATGGGAACACGCTTTAATcaactgagctacccgggcAACCAACACTACTCATTTTTGTAACGTGTGATTAACGCACGCATGTTCTGTGATGTCGCTCcatagtttgggaaatcaggaagctAAGCAGTAACGATGGTGAAAGTGTTGCCAACTTGGCGACTTTCTCGCTAGATTTAGCGACttataaatatattcaaattaGGGCTGTCCCTCCCTCTTTAaaattatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagtttgaatatatggaatggaacttgaatatatggaatgaaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80844 lncRNA upstream 35677 8854273 ~ 8929828 (+) True G60232
TU80840 lncRNA upstream 109075 8833627 ~ 8856430 (+) True G60229
TU80828 lncRNA upstream 180585 8784653 ~ 8784920 (+) True G60223
TU80806 lncRNA upstream 233583 8731713 ~ 8731922 (+) True G60201
TU80794 lncRNA upstream 318056 8647221 ~ 8647449 (+) True G60189
TU80913 lncRNA downstream 105 8989818 ~ 8990590 (+) False G60273
TU80914 lncRNA downstream 105 8989818 ~ 8991004 (+) True G60273
TU80912 lncRNA downstream 23638 9013351 ~ 9014895 (+) False vps37ba
TU80925 lncRNA downstream 61430 9051143 ~ 9055635 (+) False ppp3cca
TU81020 lncRNA downstream 293099 9282812 ~ 9283636 (+) True G60363
XM_039803657.1 mRNA upstream 399 8939829 ~ 8965106 (+) True LOC120560802
XM_039802730.1 mRNA upstream 32252 8922283 ~ 8933253 (+) True zgc:113436
XM_039802727.1 mRNA upstream 57781 8861970 ~ 8907724 (+) True slc4a5a
XM_039802728.1 mRNA upstream 57781 8861970 ~ 8907724 (+) False slc4a5a
XM_039803061.1 mRNA upstream 128532 8810554 ~ 8836973 (+) True zgc:110329
XM_039803658.1 mRNA downstream 1728 8991441 ~ 9014903 (+) True vps37ba
XM_039803659.1 mRNA downstream 28178 9017891 ~ 9055765 (+) True ppp3cca
XM_039803661.1 mRNA downstream 28178 9017891 ~ 9055765 (+) False ppp3cca
XM_039803662.1 mRNA downstream 28178 9017891 ~ 9055765 (+) False ppp3cca
XM_039803663.1 mRNA downstream 29410 9019123 ~ 9055765 (+) False ppp3cca
unassigned_transcript_250 other upstream 511635 8453799 ~ 8453870 (+) True trnaw-cca_8
unassigned_transcript_249 other upstream 513961 8451473 ~ 8451544 (+) True trnaw-cca_7
unassigned_transcript_248 other upstream 516290 8449144 ~ 8449215 (+) True trnaw-cca_6
unassigned_transcript_247 other upstream 517489 8447945 ~ 8448016 (+) True trnaw-cca_5
unassigned_transcript_246 other upstream 518654 8446780 ~ 8446851 (+) True trnaw-cca_4
unassigned_transcript_251 other downstream 223529 9213242 ~ 9213313 (+) True trnaq-cug_4
TU81099 other downstream 937237 9926950 ~ 9953239 (+) False LOC120560959
XR_005639542.1 other downstream 937336 9927049 ~ 9981054 (+) True LOC120560959
XR_005639543.1 other downstream 937336 9927049 ~ 9981054 (+) False LOC120560959
TU81096 other downstream 937394 9927107 ~ 9980989 (+) False LOC120560959

Expression Profile