RNA id: XM_039803663.1


Basic Information

Item Value
RNA id XM_039803663.1
length 4073
RNA type mRNA
GC content 0.42
exon number 14
gene id ppp3cca
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 9017891 ~ 9055765 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGAGCTTGACAAGATGGATTCCTTCACATTGATGTTGTCCTGGTTCATTGGACAGACAGGACACCATTTGTTGTGTCTGCCCAAGACAGCTGTGCCGTACCCGCCACAACATAAGCTGACTGTGAAAGAGATATATGAAGATGGCAAGCCCAACGCTGAGCTGCTACGCAACCACCTTGTCAAAGAGGGCAGGGTGGAAGAGGACGTGGCTCTAAAGATCATCAATGATGGGGCTAACATCCTTCGCCAAGAGAAGTGCATGCTGGAAGTGGAGGCGCCTATAACAGTATGTGGGGATGTCCATGGACAATTCTTTGACCTTATGAAGTTGTTTGAAGTGGGGGGATCACCCAGTAACACACGGTATCTCTTCCTCGGTGACTACGTAGATCGAGGATACTTCAGTATTGAGTGTGTTCTCTACCTCTGGTCACTCAAGATCAACCACCCAACCACACTCTTCCTCCTGCGTGGGAACCACGAGTGCCGACACCTCACAGAGTACTTCACCTTCAAACAGGAATGTAAAATTAAATACTCTGAACGGGTGTATGACGCCTGTATGGAGGCCTTTGACTGCCTGCCTCTCGCTGCCCTGCTCAACCAACAGTTCCTATGTGTACATGGCGGACTCTCACCAGAAATCAACTGCCTAGATGACATTAGGAAGTTAGACAGATTTAAAGAGCCTCCAGCATTTGGGCCAATGTGTGATCTGATTTGGGCTGACCCCGGTGAGGACTATGGCAGTGAAAAGACATCTGAACACTTCAACCATAACTCCGTCAGAGGCTGCTCATACTTTTTCAGTTACTCAGCAGTTTGTGACTTTTTGGTAAATAATAACTTGCTGTCAGTAATAAGAGCCCATGAAGCACAGGATGCAGGGTATCGTATGTACAGAAAAAGCCAGACCACAGGCTTCCCTTCATTAATCACAATCTTTTCCGCTCCAAATTACCTAGATGTCTACAACAACAAAGCTGCTGTATTAAAATATGAGAACAACGTGATGAACATCCGACAATTCAACTGCTCCCCCCACCCTTACTGGTTGCCCAATTTTATGGATGTCTTCACATGGTCTTTGCCGTTTGTTGGAGAGAAAGTGACGGAGATGCTGGTGAACGTACTGAATATTTGCTCTGACGATGAGCTCATGTCAGAGGGAGATGACCTATATGAAGgtggaACCTCAGCGATGCGTAAGGAGGTCATCCGAAACAAGATTCGCGCTGTGGGGAAAATGGCCCGAGTCTTCTCAGTCCTCAGGGAGGAAAGCGAGAATGTGTTAACACTCAAAGGCCTCACCCCAACTGGAACTCTTCCTGTGGGAGTGTTGTCAGGGGGAAAGCAGACCTTACAGACTGCAACGATTGAGGCAGCTAAAGCACAAGCCATTCAAGGCTTCTCTCCCACGAGGAAGATTCGTAACTTTGAGGAGGCACGCGGCCTGGACAGGATAAACGAGAGGATGCCGCCGCGCAAAGATGGCCAGCTGCCAGACGGCACCACGATCAACACCAACACCCCCACCTCCAACAAGAACGGCACGGATGGGTAGGCAACAGGAACACCGCCCTCCCATCTTCACACAACCAACAGCCCCTGACTCATAGCCCCTAaccactctctctgtctgtctctctccctctgtcaccTCTACTGAAACTGCATGTCTATCTTCCGCTCGCCCGCACTCGGGCGGGGAAAGGAAGGGACACATCggtagattaaaaaaacaaaacaaaaggaggCCACAGCGCTGGGAGAAACACTTTCAGCTTCTGAAAAAACGTGCGTTATATggagaaaaaatatttattttggatTAAATATATTAGATATATTGTTTATTAGTAACAAATCATTCAATGAAGACATTTTGCAAGTGTATACTGTACACTGAAGTCCTAACTTATACATgtcaaaattatatatatatatatatatatatatattttatcattttGAGTTGATACCGATAGATGAAGCCTTTGTTATCCAGGAGTTTTAgtcactttactttttttttatttttttattgttattctcCATGTGTTTGGTAAGGGAAAATTcgaagtacaaatactgtaGCCCCAACATTTTCGTTTGGATCTTGCAAGGCTCTTGCCAAGACATTTTCGGCACTTGAGGGTCTACATACTTTGCTTTCATGTGTGTCAGTTGAAAGATAAATTATGTATGAAAGAAAGGTGAAAGAAAGAATAAGGGAAGCAAATTATATTGgaacaattattacaaattaatattttgtaCTTGAAGCAGAAATTAAATGAAGACTTATGAAGtcttatttatacattttccaCAAAACTTTGATGAAACACTCCCCCCCCCAAATATGCTGAAACAGATTTGTTCAGTATTTTGTTCACTTCCAGAGTACGAACAATTTTCTTCTTGTGTTATAATTTGTGAGTGTAAATGTTCACAAATCCTTTAACAAAGTTAAGGGTTTATGCTTTGTGTGCAATGATAGTTGCTGTTCTGTGCTGGTTATGACTTGTGTTCACATAATGGCAAATAGGATGTTCTCGCTCCGCTAAACCAAATAAgggatatacagtacagcatGTCTTATTCTATCACCACAAGCAAGCCTGCCAATACTCCCACATCCCTTTTGGAAGCATCTCTTCTTCTGAAGCGTTGAAGTTAAGCCGCCTCTCTGGGATTGAGCACTGCGCATGAAGATTACGGCACGAGAAACCAACTGACAAATAAGTATATCTCTTCAGTTGTCATTgtggacaaaaaataaaatgacatattTGCTCAGAAAGCATAAGGACCTGCTGGCCACACTGTCCTCAAAAACAGACTGTTGTTCATTATTGCTTTGGAAATTTCAGTGTATCTAACAGAATGATGGCGTTTGGATTTGCATTTCATTGTCAGacgctgagaaaaaaaaaaaagggggggtgtGCTTTTTGCGGCTTTCCTTGGTTTCTAAAGCTGTATCGGTGTCTCCATCTACTGTCGGTTATACAGAATGCAGATGTTTTTTGAATTGGGATAAATTCAAAAAAAACGTGAAACATTTGACATTGAGTGAGATGACAGCTCTTTGAGGATGCTGTACCCAGACACAATGGACCGAGTCATTCCCCTCGGCAGGGATGATACTATAAAAGGTACCGCCGCCACACTAACCGCTGTCTATCAAGGCCTAAGAGTACTGTAATCATCTCAACCATGGCTGACTCATACGTACACAgtatattatttttaaactCATGGTCCTACCAATATGGGGTCCATTAGCATTTGCTGGCGTGTATATGCTTTTCTGCTCTGAAGTATTCAGCCATTCAGCTCTCTTCTGGTCACAACACCTCCACTCCTCTTCACAAGCACGCCCAACCCTTTAACACCTGCTTTTACTAAGACAAACAACCAACTCAACTGGTGCTTTGACACACCTGACTGTAATTCTGTTGTCTTTTTGTCACTCAAGAAAAGGTGGGGAAATAACCTTTAAGATTTGCTATTCTCTTGtgaatttacttttattttattttatttttaaatgaggcGTTTGTGCTCATGTGCCATGCCTCCTCGGCCACACATGTCAagatctgtatgtgtgtgtgtgtgtgtggatgttgaATGAAGCCAGGAGACTTTCAGTCACACATGATTAAAGATTCAATGTCAGTTATATTAATCTTGATATCCTTAAAATTTCTAAAATATTGTTGTTTGCCGTTACGTTCAGTAGACTTCTGGGGAAAGCTTCCTGAAGATTAAGTATTTCGGTTTACATTTATAACTGTGATgttaaaatttgtttttaaagtaagGCTTTATTGGGTGAGCCATACAGTATACTGACCTCCTGTTAGGTCCTATACATATCTCgcagaatgtaaaaaaaaaaaaaaaaaaaaatgtttatttagaaTCTTATAACAGCTGtaaagagagggggggagggggaaacTGTACCGTATTTGTCATGCAAGGCCATGAAATCTTTTATGTAGATGTATCACTTGAAAGCAAAGAATAAAATTCAAATACAGTGTTTTATTTGACTCA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80912 lncRNA upstream 4228 9013351 ~ 9014895 (+) False vps37ba
TU80914 lncRNA upstream 28119 8989818 ~ 8991004 (+) True G60273
TU80913 lncRNA upstream 28533 8989818 ~ 8990590 (+) False G60273
TU80917 lncRNA upstream 29410 8965505 ~ 8989713 (+) True G60275
TU80844 lncRNA upstream 89295 8854273 ~ 8929828 (+) True G60232
TU81020 lncRNA downstream 227047 9282812 ~ 9283636 (+) True G60363
TU81035 lncRNA downstream 408163 9463928 ~ 9464187 (+) True G60378
TU81044 lncRNA downstream 435245 9491010 ~ 9491626 (+) True G60387
TU81071 lncRNA downstream 715993 9771758 ~ 9772052 (+) True G60410
TU81075 lncRNA downstream 731672 9787437 ~ 9787707 (+) True G60414
XM_039803658.1 mRNA upstream 4220 8991441 ~ 9014903 (+) True vps37ba
XM_039803062.1 mRNA upstream 29760 8972286 ~ 8989363 (+) True LOC120560490
XM_039803657.1 mRNA upstream 54017 8939829 ~ 8965106 (+) True LOC120560802
XM_039802730.1 mRNA upstream 85870 8922283 ~ 8933253 (+) True zgc:113436
XM_039802728.1 mRNA upstream 111399 8861970 ~ 8907724 (+) False slc4a5a
XM_039804518.1 mRNA downstream 77782 9133547 ~ 9134580 (+) True tcima
XM_039803070.1 mRNA downstream 312434 9368199 ~ 9375746 (+) True LOC120560494
XM_039803877.1 mRNA downstream 871284 9927049 ~ 9981054 (+) False LOC120560959
XM_039803878.1 mRNA downstream 871284 9927049 ~ 9981054 (+) False LOC120560959
XM_039803880.1 mRNA downstream 871284 9927049 ~ 9981054 (+) False LOC120560959
unassigned_transcript_250 other upstream 565253 8453799 ~ 8453870 (+) True trnaw-cca_8
unassigned_transcript_249 other upstream 567579 8451473 ~ 8451544 (+) True trnaw-cca_7
unassigned_transcript_248 other upstream 569908 8449144 ~ 8449215 (+) True trnaw-cca_6
unassigned_transcript_247 other upstream 571107 8447945 ~ 8448016 (+) True trnaw-cca_5
unassigned_transcript_246 other upstream 572272 8446780 ~ 8446851 (+) True trnaw-cca_4
unassigned_transcript_251 other downstream 157477 9213242 ~ 9213313 (+) True trnaq-cug_4
TU81099 other downstream 871185 9926950 ~ 9953239 (+) False LOC120560959
XR_005639542.1 other downstream 871284 9927049 ~ 9981054 (+) True LOC120560959
XR_005639543.1 other downstream 871284 9927049 ~ 9981054 (+) False LOC120560959
TU81096 other downstream 871342 9927107 ~ 9980989 (+) False LOC120560959

Expression Profile