RNA id: TU81020


Basic Information

Item Value
RNA id TU81020
length 825
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G60363
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 9282812 ~ 9283636 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gggacatcctcatcggctaggtggaaagctaacgctagctgtccacctgtcccatccatcctgcttgcaagtgtccgctcattaaacaagctggactacatcctccttcaacgaaactcccaacatgagttcagagactgctgtgtttttgtttttgtggaaacatgcctgagcaacagtgtaccggaaccgggactatccagctaccaggctgctctcgccggcccgtggaggtgggctgtgttaaacggactggtgtagaaataaaatccaactagctactgctaactgctggtggagcttgtgactgttaaatgccgaccattcgacattccacgctaattcacggctgtgtttatactctgtgtttagctacaccaatgctagtatgcgttagctgaactttacggatcctgcttgcaagtgtccgctcatttagaccacaaactgcactacatccaacttcaacgaaactcccaacgtgagttcagagactgctgcgtgtttgttgttgtggaaacatgcctgaatagtgtaccggactgtccagctaccaggcctgctagccctccgagctagagatgctctgtcgccgggtaaaagaggtgggctgtgttaacactgagtggtgcagaaatgtggtgatttgtatccatttaactgctaactgctggtggagtttgactgttgaatgccgaccattctacattgcacgctaattcacggctgtgtttatgctcggtgtttacagcccaccaagcgctaatgctagtatgtgttagctgaactttacggagcctataaagtgtgtgtactaaatgtagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80925 lncRNA upstream 227177 9051143 ~ 9055635 (+) False ppp3cca
TU80912 lncRNA upstream 267917 9013351 ~ 9014895 (+) False vps37ba
TU80914 lncRNA upstream 291808 8989818 ~ 8991004 (+) True G60273
TU80913 lncRNA upstream 292222 8989818 ~ 8990590 (+) False G60273
TU80917 lncRNA upstream 293099 8965505 ~ 8989713 (+) True G60275
TU81035 lncRNA downstream 180292 9463928 ~ 9464187 (+) True G60378
TU81044 lncRNA downstream 207374 9491010 ~ 9491626 (+) True G60387
TU81071 lncRNA downstream 488122 9771758 ~ 9772052 (+) True G60410
TU81075 lncRNA downstream 503801 9787437 ~ 9787707 (+) True G60414
TU81127 lncRNA downstream 772364 10056000 ~ 10060136 (+) True G60455
XM_039804518.1 mRNA upstream 148232 9133547 ~ 9134580 (+) True tcima
XM_039803659.1 mRNA upstream 227047 9017891 ~ 9055765 (+) True ppp3cca
XM_039803661.1 mRNA upstream 227047 9017891 ~ 9055765 (+) False ppp3cca
XM_039803662.1 mRNA upstream 227047 9017891 ~ 9055765 (+) False ppp3cca
XM_039803663.1 mRNA upstream 227047 9019123 ~ 9055765 (+) False ppp3cca
XM_039803070.1 mRNA downstream 84563 9368199 ~ 9375746 (+) True LOC120560494
XM_039803877.1 mRNA downstream 643413 9927049 ~ 9981054 (+) False LOC120560959
XM_039803878.1 mRNA downstream 643413 9927049 ~ 9981054 (+) False LOC120560959
XM_039803880.1 mRNA downstream 643413 9927049 ~ 9981054 (+) False LOC120560959
XM_039803879.1 mRNA downstream 643413 9927049 ~ 9969905 (+) False LOC120560959
unassigned_transcript_251 other upstream 69499 9213242 ~ 9213313 (+) True trnaq-cug_4
unassigned_transcript_250 other upstream 828942 8453799 ~ 8453870 (+) True trnaw-cca_8
unassigned_transcript_249 other upstream 831268 8451473 ~ 8451544 (+) True trnaw-cca_7
unassigned_transcript_248 other upstream 833597 8449144 ~ 8449215 (+) True trnaw-cca_6
unassigned_transcript_247 other upstream 834796 8447945 ~ 8448016 (+) True trnaw-cca_5
TU81099 other downstream 643314 9926950 ~ 9953239 (+) False LOC120560959
XR_005639542.1 other downstream 643413 9927049 ~ 9981054 (+) True LOC120560959
XR_005639543.1 other downstream 643413 9927049 ~ 9981054 (+) False LOC120560959
TU81096 other downstream 643471 9927107 ~ 9980989 (+) False LOC120560959
XR_005639562.1 other downstream 1442810 10726446 ~ 10746948 (+) False LOC120561142

Expression Profile