RNA id: TU81071


Basic Information

Item Value
RNA id TU81071
length 295
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G60410
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 9771758 ~ 9772052 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGCTccattaatgctgaaaggtaCATACAAGTTTTGGAGCAACTTATGTTGTCATCCAAGCAATGTGTTTTTCAGGGACGTCCCTGCttatttcagcaagacaatgcCAAGCCACATTCTGCACGTGTTACAACAGCGTGGCTTCTGTGACGTGGGAGCAGGGAATGTGGACTCAAacgcagagagaggcagggaggAGATGGATGTAACTCAGGGTAACAAAAGGCGGCAACACAAAGactggaacacacacaaaatcaaaaaCTGACGGGCTAAACGCAGGCAGGAGTAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81044 lncRNA upstream 280132 9491010 ~ 9491626 (+) True G60387
TU81035 lncRNA upstream 307571 9463928 ~ 9464187 (+) True G60378
TU81020 lncRNA upstream 488122 9282812 ~ 9283636 (+) True G60363
TU80925 lncRNA upstream 716123 9051143 ~ 9055635 (+) False ppp3cca
TU80912 lncRNA upstream 756863 9013351 ~ 9014895 (+) False vps37ba
TU81075 lncRNA downstream 15385 9787437 ~ 9787707 (+) True G60414
TU81127 lncRNA downstream 283948 10056000 ~ 10060136 (+) True G60455
TU81124 lncRNA downstream 301246 10073298 ~ 10090114 (+) True G60453
TU81146 lncRNA downstream 570047 10342099 ~ 10342380 (+) True G60474
TU81148 lncRNA downstream 570375 10342427 ~ 10362860 (+) True G60475
XM_039803070.1 mRNA upstream 396012 9368199 ~ 9375746 (+) True LOC120560494
XM_039804518.1 mRNA upstream 637178 9133547 ~ 9134580 (+) True tcima
XM_039803661.1 mRNA upstream 715993 9017891 ~ 9055765 (+) False ppp3cca
XM_039803877.1 mRNA downstream 154997 9927049 ~ 9981054 (+) False LOC120560959
XM_039803878.1 mRNA downstream 154997 9927049 ~ 9981054 (+) False LOC120560959
XM_039803880.1 mRNA downstream 154997 9927049 ~ 9981054 (+) False LOC120560959
XM_039803879.1 mRNA downstream 154997 9927049 ~ 9969905 (+) False LOC120560959
XM_039804112.1 mRNA downstream 954386 10726438 ~ 10746953 (+) True LOC120561142
unassigned_transcript_251 other upstream 558445 9213242 ~ 9213313 (+) True trnaq-cug_4
unassigned_transcript_250 other upstream 1317888 8453799 ~ 8453870 (+) True trnaw-cca_8
unassigned_transcript_249 other upstream 1320214 8451473 ~ 8451544 (+) True trnaw-cca_7
unassigned_transcript_248 other upstream 1322543 8449144 ~ 8449215 (+) True trnaw-cca_6
unassigned_transcript_247 other upstream 1323742 8447945 ~ 8448016 (+) True trnaw-cca_5
TU81099 other downstream 154898 9926950 ~ 9953239 (+) False LOC120560959
XR_005639542.1 other downstream 154997 9927049 ~ 9981054 (+) True LOC120560959
XR_005639543.1 other downstream 154997 9927049 ~ 9981054 (+) False LOC120560959
TU81096 other downstream 155055 9927107 ~ 9980989 (+) False LOC120560959
XR_005639562.1 other downstream 954394 10726446 ~ 10746948 (+) False LOC120561142

Expression Profile