RNA id: XR_005639542.1


Basic Information

Item Value
RNA id XR_005639542.1
length 2300
RNA type transcript
GC content 0.39
exon number 7
gene id LOC120560959
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 9926950 ~ 9981054 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgtaatagtcCTCTACAACCGGAACCCTTGTTTTTACTTAAACGTTCCCCCCGGAATGGTTATTTCGTAGTACATGCTAAAAGCTGTTAGTGAGAGGTAAAGTAGTATTCAACATGGCAGAGacCCACAGCTTGCAGGACATGAGGCAACAGGCAGCCGTTGCTGCCAAAGTCTTCATTCAGAGAGATTATACCAAAGGCACTGTGTGCCAGTTCCAAACCAAGTTCCCCTCTGAGCTGGAGACCCGGATTGACAAGCAGCAGTTTGAGGAGACGGTGCAGACACTGAATAACCTGTACGCTGAAGCGGAGAAACTGGGAAGCCAGTCATATATTGAAGGCTGTCTGGCCTGCCTCACAGCCTACACCATCTTCCTGTGTATGGAGACTCACTATGAGAAGGTTTTGAAGAAGATTGCAAAGTACATTCAGGAGCAGAATGATAAGATCTACGCACCACGAGGCCTCCTGCTCACCGATCCCATCGAGAGAGGCCTGCGAGTTATCGAAGTTACTATCTTTGAAGACAGAAGCTAGATAAAAGCTGCCATGatcgagcAGTAATAAAAGAGGACTCACTATGTGTACcagagatacaagCAGCTGTTTGGCTGAGCAGAGGTACAAGTCTGCAGCAGCCCAGCACCAGTGGCCAGCTCCCTGAGGACCCCCAGACCTGCACCTTTTAATACTGCGTCTCTACaatctatctctttctgctAATCATGTGCATGTTCAGAATATCTTTTCCCCATGCATTAATTAAGGGCTTGTTACTGTATATCCTTGTATTTGGTTGGAGAAAACAAACTCACTTACACATTGTATTGGCATTCTTTAAACCATGAGTAATTATCCTTTATCTTGGACTAAAAACAACTTTATGAACTTTTGTATATTTGGTTTTTGGACCCTCCTTTTTGAATAATAAACAGACAGGGTATTTTTTTATGAAGGACTATGGAACTCATCCACACACATGCTTTAATTGATTGTCTTGGCTGAACTGAGGCTTTTATGTAATCAAGAAACTGAACTCTGGTTATTAGTGTGATTTGTTTCACATCCAGCACCCCACAGTTTGTTGGCTTTATTCTTATTCATGTATTCTTGCAAGGATGCTTGGTAGTTTATCATCTTCCCTGCATGTTTACTTTGTAGCATTTTACCTTATAGTTAACTGACAACACTGAACTTTGTCAGGATCCAAACATTCCTGTCAAATGTCACAGATTCTGACCTTAATGTATATCTTTGATTTTTTGatattgtcaatttttttcttttttataaactGTGCTATGCATAGTGTTTGACTACTGTTGAGCTTTGGCTCATGTCTAATAAGCATATATTCATATTTTGTGAGATTGCCTTTGACCGAAGTATTAAAAGTGCTCTTGTTAGTTGACAGTGCCTGTAATGGTTTTGAATGTTTCCTTTGTTAAAGTCTAAGGTGCTGCTTACACCAGGACTTAAAACAGAGATTTCAATTAATTCCAATGACTACAAGTGAATTTGCTCATGGGGGCTAAAGAAACTCAGTTAAAATGTTTTGCGTCAAGTTTAACGTTTGTGAATTTGACCTTCAAATTTGCATTTTTGACCAACAGCCAGCTTCCTTGACTGTACCAATTCTCCTGTTGGCAACAGTGCTAAGCTAACAAGCTTGTTAGCTCTAAGAGCTTTTTTCCctctttaataactttttttattgattgAAATGGTGTAAACTAGTGATCAGGGGGGGGGTATAAACAGAACAATAGAGGGAATATTTCCAGCTGGCTGGGCTAGCACCAGATTTAGCAGTTAGCTTGCCAGCTACAGCATTTCCCCAGCTAGCCCTGTGAGTACGGTCACCAAGCTTTAGAACCAAATACTTTGTAAAGACgcaacagaaacattttaccgcaccagtttgtgtgttcagtgtgaCCAGACCTTAACTGTGAACTCATGTCAGTCAGATCTTGGCTTTGTCCCCTGTTGCTAACAAGCATCTAAAACCTAAGATTATGATATGTATGTAACCCTAACAAAGGTTGAATATACTGTAGTACGTATGACTGGTAATGTTAAATTATGAAATAACTACATGTACAAGTATATATTTCTGAATGCCATAGCTATGGATCAATTATCTTGATTTCTAAGTATGTAAATAATATTTCATGAATGAGTTTTGATTTAGCTCATACTTTATTTATCTGgagttttctattttttttttctgttgaaatCCAATGTTTTATTAATCTAAACTTGTATGctaacaaataaaatgtgtacATATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81075 lncRNA upstream 139342 9787437 ~ 9787707 (+) True G60414
TU81071 lncRNA upstream 154997 9771758 ~ 9772052 (+) True G60410
TU81044 lncRNA upstream 435423 9491010 ~ 9491626 (+) True G60387
TU81035 lncRNA upstream 462862 9463928 ~ 9464187 (+) True G60378
TU81020 lncRNA upstream 643413 9282812 ~ 9283636 (+) True G60363
TU81127 lncRNA downstream 74946 10056000 ~ 10060136 (+) True G60455
TU81124 lncRNA downstream 92244 10073298 ~ 10090114 (+) True G60453
TU81146 lncRNA downstream 361045 10342099 ~ 10342380 (+) True G60474
TU81148 lncRNA downstream 361373 10342427 ~ 10362860 (+) True G60475
TU81152 lncRNA downstream 373238 10354292 ~ 10366724 (+) True G60479
XM_039803070.1 mRNA upstream 551303 9368199 ~ 9375746 (+) True LOC120560494
XM_039804518.1 mRNA upstream 792469 9133547 ~ 9134580 (+) True tcima
XM_039803661.1 mRNA upstream 871284 9017891 ~ 9055765 (+) False ppp3cca
XM_039804112.1 mRNA downstream 745384 10726438 ~ 10746953 (+) True LOC120561142
XM_039804111.1 mRNA downstream 745385 10726439 ~ 10746953 (+) False LOC120561142
XM_039804113.1 mRNA downstream 767063 10748117 ~ 10752440 (+) False LOC120561144
XM_039802043.1 mRNA downstream 1191965 11173019 ~ 11188211 (+) False marveld2b
XM_039802044.1 mRNA downstream 1192020 11173074 ~ 11188211 (+) False marveld2b
unassigned_transcript_251 other upstream 713736 9213242 ~ 9213313 (+) True trnaq-cug_4
unassigned_transcript_250 other upstream 1473179 8453799 ~ 8453870 (+) True trnaw-cca_8
unassigned_transcript_249 other upstream 1475505 8451473 ~ 8451544 (+) True trnaw-cca_7
unassigned_transcript_248 other upstream 1477834 8449144 ~ 8449215 (+) True trnaw-cca_6
unassigned_transcript_247 other upstream 1479033 8447945 ~ 8448016 (+) True trnaw-cca_5
XR_005639562.1 other downstream 745392 10726446 ~ 10746948 (+) False LOC120561142
XR_005639564.1 other downstream 767062 10748116 ~ 10752440 (+) True LOC120561144
XR_005639563.1 other downstream 767062 10748116 ~ 10752440 (+) False LOC120561144
XR_005639565.1 other downstream 767062 10748116 ~ 10752440 (+) False LOC120561144
TU81647 other downstream 1945129 11926183 ~ 11926601 (+) True G60897

Expression Profile