RNA id: TU81124


Basic Information

Item Value
RNA id TU81124
length 972
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G60453
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 10073298 ~ 10090114 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaaaaaaaaaaacAGGGCAACACTTTTGATCAACAATTTTACAATACAGTCAGCCATATCGCATACTTTTTACAACCAAACCTAACTGCTGTCCAGCATAATATAATCTCATAGCAATTGATCACAAGGCATTTTGTTTATTGCTTCATATGTTCCATTGCTCAATCAGTGCGGCCATTAAGACATTCATTCCTAAGGTCTGATGAACATCACATTCACTATGTGAAACAATCAAGCAGTCTTAAGATTTGGTCtaattttaagtaaaaaaaaaaaagttttacacACTGATAAACAAGACACTTCTTGTAATTAAATACTCCCATTATCAACACTGCATGTAGAGCTAAGGAAagtcagaaaaaagaaaactgaattCTAGCTCATTTTGGAGTGTGTGTAAGGCCAAGCATGCCTGTAATTAAGCCACTAAACAAGGCCctgcattacctgaagtagcaGCAGCTTCAGTAAAATATTCACATTGTAAGTGTAAGACTACTATGGACAGGAGGTAGCCTTCTGAGGTGCTTATTGGACAATATGTACAATACTCAAGCCTACTCCAACAAGGACCTCACACCATGAGTTTTTCATGGCACATTTCAGGTAACAGGTTAGAGGTCATCTTCTTCATCTGGAGTGCTGTTTGCAAGGGGTTTTCTTGAACAATTCACCTCTCATTATCACAAAAGTAATGACCATTGAGAACAGCATTTTCCTTGACAGTCTCAGCTGTTCGCCTTTGATTTAAATCAAGCAATGCTTTTAGCAGGTCATTTAAGGTGGCTTCTTTGCCCTCTTTCTCCACCCAAATATTCAGCAATTCATGGATCTTGTCATCATAGAGAAGGTGGTCTTTGCTTTTGATTACATTGTCCATTATCCCAATGTGCCGGAAGAATCTCTTGTGGTAGTAGAAGTCCATTTCTTCAAAATACTCAAAGCATTTCCTCAAAGACTCTTCACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81127 lncRNA upstream 13162 10056000 ~ 10060136 (+) True G60455
TU81075 lncRNA upstream 285591 9787437 ~ 9787707 (+) True G60414
TU81071 lncRNA upstream 301246 9771758 ~ 9772052 (+) True G60410
TU81044 lncRNA upstream 581672 9491010 ~ 9491626 (+) True G60387
TU81035 lncRNA upstream 609111 9463928 ~ 9464187 (+) True G60378
TU81146 lncRNA downstream 251985 10342099 ~ 10342380 (+) True G60474
TU81148 lncRNA downstream 252313 10342427 ~ 10362860 (+) True G60475
TU81152 lncRNA downstream 264178 10354292 ~ 10366724 (+) True G60479
TU81216 lncRNA downstream 478192 10568306 ~ 10568886 (+) True G60533
TU81251 lncRNA downstream 596569 10686683 ~ 10704693 (+) True G60566
XM_039803877.1 mRNA upstream 92244 9927049 ~ 9981054 (+) False LOC120560959
XM_039803878.1 mRNA upstream 92244 9927049 ~ 9981054 (+) False LOC120560959
XM_039803880.1 mRNA upstream 92244 9927049 ~ 9981054 (+) False LOC120560959
XM_039803879.1 mRNA upstream 103393 9927049 ~ 9969905 (+) False LOC120560959
XM_039803070.1 mRNA upstream 697552 9368199 ~ 9375746 (+) True LOC120560494
XM_039804112.1 mRNA downstream 636324 10726438 ~ 10746953 (+) True LOC120561142
XM_039804111.1 mRNA downstream 636325 10726439 ~ 10746953 (+) False LOC120561142
XM_039804113.1 mRNA downstream 658003 10748117 ~ 10752440 (+) False LOC120561144
XM_039802043.1 mRNA downstream 1082905 11173019 ~ 11188211 (+) False marveld2b
XM_039802044.1 mRNA downstream 1082960 11173074 ~ 11188211 (+) False marveld2b
XR_005639542.1 other upstream 92244 9927049 ~ 9981054 (+) True LOC120560959
XR_005639543.1 other upstream 92244 9927049 ~ 9981054 (+) False LOC120560959
TU81096 other upstream 92309 9927107 ~ 9980989 (+) False LOC120560959
TU81099 other upstream 120059 9926950 ~ 9953239 (+) False LOC120560959
unassigned_transcript_251 other upstream 859985 9213242 ~ 9213313 (+) True trnaq-cug_4
XR_005639562.1 other downstream 636332 10726446 ~ 10746948 (+) False LOC120561142
XR_005639564.1 other downstream 658002 10748116 ~ 10752440 (+) True LOC120561144
XR_005639563.1 other downstream 658002 10748116 ~ 10752440 (+) False LOC120561144
XR_005639565.1 other downstream 658002 10748116 ~ 10752440 (+) False LOC120561144
TU81647 other downstream 1836069 11926183 ~ 11926601 (+) True G60897

Expression Profile