RNA id: TU81260


Basic Information

Item Value
RNA id TU81260
length 235
lncRNA type intronic
GC content 0.34
exon number 1
gene id G60575
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 10742652 ~ 10742886 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggtgaggatggtttgacttttcgtgatgtcctttttttcaactatggccaggctaaaagataaagttagaggggtggcttaacagaggtttTGACTATATGTTGATttgatgtttagattttagcttagtaatgctcattcagttgtactgcatgtacctttgaatctgtattctcatattttgcaaaatataataaatgctcaaagaccagactttggtttaattctcaaacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81259 lncRNA upstream 6472 10735721 ~ 10736180 (+) True G60574
TU81251 lncRNA upstream 37959 10686683 ~ 10704693 (+) True G60566
XR_005639494.1 lncRNA upstream 39218 10702631 ~ 10703434 (+) True LOC120560597
XR_005639493.1 lncRNA upstream 40135 10701819 ~ 10702517 (+) True LOC120560596
TU81216 lncRNA upstream 173766 10568306 ~ 10568886 (+) True G60533
TU81262 lncRNA downstream 27660 10770546 ~ 10770824 (+) True G60577
TU81296 lncRNA downstream 69893 10812779 ~ 10814069 (+) False G60607
TU81298 lncRNA downstream 69893 10812779 ~ 10852906 (+) True G60607
TU81299 lncRNA downstream 71677 10814563 ~ 10840317 (+) True G60608
TU81312 lncRNA downstream 159175 10902061 ~ 10905629 (+) True G60620
XM_039803877.1 mRNA upstream 761598 9927049 ~ 9981054 (+) False LOC120560959
XM_039803878.1 mRNA upstream 761598 9927049 ~ 9981054 (+) False LOC120560959
XM_039803880.1 mRNA upstream 761598 9927049 ~ 9981054 (+) False LOC120560959
XM_039803879.1 mRNA upstream 772747 9927049 ~ 9969905 (+) False LOC120560959
XM_039803070.1 mRNA upstream 1366906 9368199 ~ 9375746 (+) True LOC120560494
XM_039804113.1 mRNA downstream 5231 10748117 ~ 10752440 (+) False LOC120561144
XM_039802043.1 mRNA downstream 430133 11173019 ~ 11188211 (+) False marveld2b
XM_039802044.1 mRNA downstream 430188 11173074 ~ 11188211 (+) False marveld2b
XM_039802042.1 mRNA downstream 430901 11173787 ~ 11188211 (+) True marveld2b
XM_039804537.1 mRNA downstream 450601 11193487 ~ 11206112 (+) True oclnb
XR_005639542.1 other upstream 761598 9927049 ~ 9981054 (+) True LOC120560959
XR_005639543.1 other upstream 761598 9927049 ~ 9981054 (+) False LOC120560959
TU81096 other upstream 761663 9927107 ~ 9980989 (+) False LOC120560959
TU81099 other upstream 789413 9926950 ~ 9953239 (+) False LOC120560959
unassigned_transcript_251 other upstream 1529339 9213242 ~ 9213313 (+) True trnaq-cug_4
XR_005639564.1 other downstream 5230 10748116 ~ 10752440 (+) True LOC120561144
XR_005639563.1 other downstream 5230 10748116 ~ 10752440 (+) False LOC120561144
XR_005639565.1 other downstream 5230 10748116 ~ 10752440 (+) False LOC120561144
TU81647 other downstream 1183297 11926183 ~ 11926601 (+) True G60897
TU81938 other downstream 2178261 12921147 ~ 12923836 (+) False G61139

Expression Profile